Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   L1P14_RS09255 Genome accession   NZ_CP091029
Coordinates   1896940..1898367 (-) Length   475 a.a.
NCBI ID   WP_000980633.1    Uniprot ID   -
Organism   Escherichia coli strain STEC384     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1891940..1903367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P14_RS09225 yeeZ 1891995..1892819 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  L1P14_RS09230 yeeY 1892865..1893794 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  L1P14_RS09235 yoeI 1894009..1894071 (+) 63 WP_010723108.1 membrane protein YoeI -
  L1P14_RS09240 plaP 1894061..1895419 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  L1P14_RS09245 tsuA 1895598..1896656 (+) 1059 WP_000492335.1 thiosulfate utilization transporter TsuA/YeeE -
  L1P14_RS09250 tsuB 1896670..1896897 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  L1P14_RS09255 sbcB 1896940..1898367 (-) 1428 WP_000980633.1 exodeoxyribonuclease I Machinery gene
  L1P14_RS09260 dacD 1898556..1899722 (+) 1167 WP_235418609.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  L1P14_RS09265 sbmC 1899841..1900314 (+) 474 WP_001105382.1 DNA gyrase inhibitor SbmC -
  L1P14_RS09270 yeeA 1900513..1901571 (+) 1059 WP_001200891.1 FUSC family protein -
  L1P14_RS09275 tmaR 1901743..1902072 (+) 330 WP_000450409.1 DUF496 family protein -
  L1P14_RS09280 - 1902173..1902469 (-) 297 Protein_1826 EutP/PduV family microcompartment system protein -
  L1P14_RS09285 - 1902448..1902807 (+) 360 WP_000543549.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54512.83 Da        Isoelectric Point: 5.6070

>NTDB_id=557788 L1P14_RS09255 WP_000980633.1 1896940..1898367(-) (sbcB) [Escherichia coli strain STEC384]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPVDDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=557788 L1P14_RS09255 WP_000980633.1 1896940..1898367(-) (sbcB) [Escherichia coli strain STEC384]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
TGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTATGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579