Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   KCG38_RS27900 Genome accession   NZ_CP073080
Coordinates   5937859..5938416 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain NDTH9845     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5932859..5943416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG38_RS27880 (KCG38_27880) pilR 5934135..5935472 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  KCG38_RS27885 (KCG38_27885) thiO 5935518..5936612 (-) 1095 WP_191519341.1 glycine oxidase ThiO -
  KCG38_RS27890 (KCG38_27890) - 5936747..5937256 (+) 510 WP_023088572.1 Tfp pilus assembly protein FimT/FimU -
  KCG38_RS27895 (KCG38_27895) - 5937362..5937868 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  KCG38_RS27900 (KCG38_27900) pilV 5937859..5938416 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  KCG38_RS27905 (KCG38_27905) pilW 5938413..5939237 (+) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  KCG38_RS27910 (KCG38_27910) pilX 5939234..5939821 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  KCG38_RS27915 (KCG38_27915) pilY1 5939833..5943324 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=557775 KCG38_RS27900 WP_003094697.1 5937859..5938416(+) (pilV) [Pseudomonas aeruginosa strain NDTH9845]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=557775 KCG38_RS27900 WP_003094697.1 5937859..5938416(+) (pilV) [Pseudomonas aeruginosa strain NDTH9845]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAAGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACATCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978