Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KBU69_RS12510 Genome accession   NZ_CP073076
Coordinates   2534466..2535062 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae subsp. pneumoniae Ecl8     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2529466..2540062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBU69_RS12495 (KBU69_12485) helD 2529674..2531728 (-) 2055 WP_004224033.1 DNA helicase IV -
  KBU69_RS12500 (KBU69_12490) - 2531853..2532299 (+) 447 WP_004224032.1 YccF domain-containing protein -
  KBU69_RS12505 (KBU69_12495) yccS 2532317..2534452 (+) 2136 WP_002898422.1 YccS family putative transporter -
  KBU69_RS12510 (KBU69_12500) sxy/tfoX 2534466..2535062 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  KBU69_RS12515 (KBU69_12505) sulA 2535411..2535920 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  KBU69_RS12520 (KBU69_12510) ompA 2536273..2537343 (+) 1071 WP_002898408.1 porin OmpA -
  KBU69_RS12525 (KBU69_12515) matP 2537477..2537929 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  KBU69_RS12530 (KBU69_12520) - 2538115..2539872 (+) 1758 WP_004224030.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=557728 KBU69_RS12510 WP_004179217.1 2534466..2535062(-) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=557728 KBU69_RS12510 WP_004179217.1 2534466..2535062(-) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51