Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   L1P12_RS09335 Genome accession   NZ_CP091026
Coordinates   1950944..1952371 (-) Length   475 a.a.
NCBI ID   WP_000980608.1    Uniprot ID   -
Organism   Escherichia coli strain STEC383     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1945944..1957371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P12_RS09305 yeeZ 1945999..1946823 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  L1P12_RS09310 yeeY 1946869..1947798 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  L1P12_RS09315 yoeI 1948013..1948075 (+) 63 WP_010723108.1 membrane protein YoeI -
  L1P12_RS09320 plaP 1948065..1949423 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  L1P12_RS09325 tsuA 1949602..1950660 (+) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  L1P12_RS09330 tsuB 1950674..1950901 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  L1P12_RS09335 sbcB 1950944..1952371 (-) 1428 WP_000980608.1 exodeoxyribonuclease I Machinery gene
  L1P12_RS09340 dacD 1952580..1953746 (+) 1167 WP_001464461.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  L1P12_RS09345 sbmC 1953865..1954338 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  L1P12_RS09350 yeeA 1954536..1955594 (+) 1059 WP_001200891.1 FUSC family protein -
  L1P12_RS09355 tmaR 1955766..1956095 (+) 330 WP_000450409.1 DUF496 family protein -
  L1P12_RS09360 - 1956196..1956378 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  L1P12_RS09365 - 1956450..1956578 (+) 129 Protein_1841 transposase domain-containing protein -
  L1P12_RS09370 - 1956867..1956959 (-) 93 Protein_1842 DUF957 domain-containing protein -
  L1P12_RS09375 yeeW 1956993..1957187 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54457.75 Da        Isoelectric Point: 5.6070

>NTDB_id=557709 L1P12_RS09335 WP_000980608.1 1950944..1952371(-) (sbcB) [Escherichia coli strain STEC383]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=557709 L1P12_RS09335 WP_000980608.1 1950944..1952371(-) (sbcB) [Escherichia coli strain STEC383]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGGATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTTCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581