Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J8N07_RS12310 Genome accession   NZ_CP073074
Coordinates   2761796..2763145 (+) Length   449 a.a.
NCBI ID   WP_065399266.1    Uniprot ID   A0A1B8ZUM4
Organism   Chryseobacterium arthrosphaerae strain LMY     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2756796..2768145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8N07_RS12295 (J8N07_12290) - 2757883..2758638 (+) 756 WP_229045836.1 SDR family oxidoreductase -
  J8N07_RS12300 (J8N07_12295) - 2758620..2759921 (+) 1302 WP_229045837.1 phosphatase PAP2/dual specificity phosphatase family protein -
  J8N07_RS12305 (J8N07_12300) - 2759925..2761625 (+) 1701 WP_229045838.1 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase -
  J8N07_RS12310 (J8N07_12305) radA 2761796..2763145 (+) 1350 WP_065399266.1 DNA repair protein RadA Machinery gene
  J8N07_RS12315 (J8N07_12310) - 2763201..2763872 (+) 672 WP_229045839.1 class I SAM-dependent methyltransferase -
  J8N07_RS12320 (J8N07_12315) - 2763869..2764576 (+) 708 WP_229045840.1 VanW family protein -
  J8N07_RS12325 (J8N07_12320) - 2764573..2765166 (+) 594 WP_229045841.1 ACP phosphodiesterase -
  J8N07_RS12330 (J8N07_12325) - 2765163..2765678 (-) 516 WP_229045842.1 DUF6702 family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49972.56 Da        Isoelectric Point: 6.6946

>NTDB_id=557704 J8N07_RS12310 WP_065399266.1 2761796..2763145(+) (radA) [Chryseobacterium arthrosphaerae strain LMY]
MAKLKTAYFCQNCGTQYPQWMGQCKNCGQWNTLVEEVVEKPSHKTPPFSKSKQHVINIVEVETSEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLTDIQNPNCFLFTETSLEKILHEAKKL
EPDFMIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTAEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVIASVLSSNEDIAISEHYCFAGEIGLSGEIRPV
AQIEQRITEAEKLGYEKIFVSNLNKIPKRKFGIRIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=557704 J8N07_RS12310 WP_065399266.1 2761796..2763145(+) (radA) [Chryseobacterium arthrosphaerae strain LMY]
ATGGCAAAACTGAAAACAGCATATTTCTGTCAAAACTGCGGAACTCAATATCCCCAATGGATGGGACAATGCAAAAACTG
CGGACAGTGGAATACACTCGTGGAAGAAGTAGTGGAAAAACCATCCCATAAAACTCCTCCATTTTCAAAAAGCAAGCAAC
ATGTCATCAATATTGTTGAAGTGGAAACCAGTGAGGAACCAAGAATCAAAACTCCTTCTGAGGAACTTAACCGTGTTCTC
GGAGGCGGTATTGTTTTAGGCTCTGTTACGCTGATCGGCGGTGAACCCGGAATTGGAAAATCTACCCTGCTCCTCCAGCT
GGCCCTGAAAATGAAGAAAAAAATATTCTATGTTTCCGGGGAGGAAAGTGCCTCCCAGATCAAGATGAGGGCCGACAGAC
TGACAGATATCCAAAATCCGAACTGTTTTCTCTTTACCGAAACTTCACTGGAAAAAATCCTTCATGAAGCCAAAAAACTG
GAACCGGACTTTATGATCATCGACTCTATCCAGACGCTTCAGTCTCAGCTGATCGAAAGTTCTCCGGGAACCGTTTCCCA
AATCAGAGAATGTTCCAATGAAATTATCAAGTATGCCAAAGAAAACAATACTCCGGTATTTCTGGTAGGCCATATTACCA
AAGACGGGCAGATTGCCGGCCCAAAAGTCCTGGAACATATGGTGGATGTGGTTTTAAATTTTGACGGGGACCGGAATCAC
CTTTTCAGGTTATTGAGGGCGAATAAAAACCGTTTTGGATCTACTGCCGAAATCGGAATTTATGAAATGGTCTCCCAGGG
TCTGAAAGAGATTAAAAATCCTTCTGAAATTCTTATTACCAAAAAGTTTGAGGAACTGTCCGGAAATTCAGTAGCCGTAA
CCTTAGAGGGAAACCGGCCTATGCTTCTGGAAATCCAGGCCTTGGTGAGTACAGCAGTTTATGGTACTCCTCAGAGAAGC
TCTACCGGTTTTGACTCCAAGAGATTAAATATGCTTCTGGCAGTGCTTGAAAAAAGAGCAGGCTTTCAACTGGGTGCTAA
AGATGTCTTTCTCAACATCACCGGGGGAATAAAAACAGATGATCCGGCACTGGATCTGGCCGTTATTGCTTCAGTACTTT
CATCCAATGAAGACATTGCCATTTCCGAACATTATTGTTTTGCCGGAGAGATCGGACTGAGTGGAGAAATACGTCCGGTT
GCCCAGATTGAACAGAGAATCACCGAAGCTGAAAAGCTAGGATATGAAAAGATATTTGTGTCCAACCTTAATAAAATTCC
GAAGAGAAAATTTGGAATCAGGATTGAAGAGGTAAGCAAAATTGAAGATTTCCATGAAAGGCTTTTCTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)

AAA domain (AAA_25)

(64-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B8ZUM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.558

100

0.499
  radA Streptococcus pneumoniae Rx1

48.246

100

0.49
  radA Streptococcus pneumoniae D39

48.246

100

0.49
  radA Streptococcus pneumoniae R6

48.246

100

0.49
  radA Streptococcus pneumoniae TIGR4

48.246

100

0.49
  radA Streptococcus mitis NCTC 12261

48.246

100

0.49
  radA Streptococcus mitis SK321

50.118

94.209

0.472