Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   KBU60_RS22350 Genome accession   NZ_CP073069
Coordinates   1546502..1547599 (+) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus strain FB-11     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1541502..1552599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBU60_RS22320 (KBU60_22320) - 1541638..1542615 (+) 978 WP_005477354.1 Gfo/Idh/MocA family oxidoreductase -
  KBU60_RS22325 (KBU60_22325) - 1542689..1544026 (-) 1338 WP_180760436.1 MATE family efflux transporter -
  KBU60_RS22330 (KBU60_22330) - 1544149..1544463 (-) 315 WP_005453573.1 DUF496 family protein -
  KBU60_RS22335 (KBU60_22335) - 1544791..1545006 (+) 216 WP_005477197.1 hypothetical protein -
  KBU60_RS22340 (KBU60_22340) - 1545184..1545834 (+) 651 WP_212569452.1 YceH family protein -
  KBU60_RS22345 (KBU60_22345) - 1545831..1546151 (+) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  KBU60_RS22350 (KBU60_22350) luxP 1546502..1547599 (+) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  KBU60_RS22355 (KBU60_22355) luxQ 1547599..1550175 (+) 2577 WP_005477121.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  KBU60_RS22360 (KBU60_22360) slyA 1550387..1550842 (+) 456 WP_180793113.1 transcriptional regulator SlyA -
  KBU60_RS22365 (KBU60_22365) - 1550880..1551935 (+) 1056 WP_015313427.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=557678 KBU60_RS22350 WP_005463467.1 1546502..1547599(+) (luxP) [Vibrio parahaemolyticus strain FB-11]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=557678 KBU60_RS22350 WP_005463467.1 1546502..1547599(+) (luxP) [Vibrio parahaemolyticus strain FB-11]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTACCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCTGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGACCAAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTGAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACACGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCCGGGTATGAAGCTGCAAAAGCCAGCTTGAAAAAATACCCAGATGTCGAGTTCATTTATGCTTGTTCAACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTTTCTGAACTTGGCCGTGAAGACGTTATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCTATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAGCCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644