Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KBU60_RS08915 Genome accession   NZ_CP073068
Coordinates   1887993..1889414 (+) Length   473 a.a.
NCBI ID   WP_140287582.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FB-11     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1882993..1894414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBU60_RS08895 (KBU60_08895) - 1883052..1883804 (-) 753 WP_031857920.1 adenosylcobinamide-GDP ribazoletransferase -
  KBU60_RS08900 (KBU60_08900) cobT 1883849..1884892 (-) 1044 WP_025533986.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  KBU60_RS08905 (KBU60_08905) - 1885576..1886271 (+) 696 WP_017448627.1 NAD(P)H-binding protein -
  KBU60_RS08910 (KBU60_08910) - 1886464..1887837 (+) 1374 WP_140287581.1 L-cystine transporter -
  KBU60_RS08915 (KBU60_08915) sbcB 1887993..1889414 (+) 1422 WP_140287582.1 exodeoxyribonuclease I Machinery gene
  KBU60_RS08920 (KBU60_08920) - 1889470..1889844 (+) 375 WP_005455074.1 CidA/LrgA family protein -
  KBU60_RS08925 (KBU60_08925) - 1889846..1890523 (+) 678 WP_020840482.1 LrgB family protein -
  KBU60_RS08930 (KBU60_08930) cdd 1890888..1891775 (+) 888 WP_020840481.1 cytidine deaminase -
  KBU60_RS08935 (KBU60_08935) purT 1891923..1893098 (+) 1176 WP_069546068.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  KBU60_RS08940 (KBU60_08940) - 1893200..1893850 (-) 651 WP_140100360.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54685.06 Da        Isoelectric Point: 5.0454

>NTDB_id=557657 KBU60_RS08915 WP_140287582.1 1887993..1889414(+) (sbcB) [Vibrio parahaemolyticus strain FB-11]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKRDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=557657 KBU60_RS08915 WP_140287582.1 1887993..1889414(+) (sbcB) [Vibrio parahaemolyticus strain FB-11]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCCGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCTGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTACCGCAACTTTATCGATCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCAGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCACAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAACGTCAATTTGAAAAAAGAGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799