Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   KBU60_RS02860 Genome accession   NZ_CP073068
Coordinates   589872..590390 (+) Length   172 a.a.
NCBI ID   WP_025508497.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FB-11     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 584872..595390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBU60_RS02850 (KBU60_02850) gshA 587607..589175 (+) 1569 WP_140287835.1 glutamate--cysteine ligase -
  KBU60_RS02855 (KBU60_02855) - 589200..589805 (+) 606 WP_171822035.1 hypothetical protein -
  KBU60_RS02860 (KBU60_02860) luxS 589872..590390 (+) 519 WP_025508497.1 S-ribosylhomocysteine lyase Regulator
  KBU60_RS02865 (KBU60_02865) - 590451..591731 (-) 1281 WP_005462557.1 CNNM domain-containing protein -
  KBU60_RS02870 (KBU60_02870) - 591857..592651 (-) 795 WP_140287834.1 inner membrane protein YpjD -
  KBU60_RS02875 (KBU60_02875) ffh 592864..594255 (+) 1392 WP_045586564.1 signal recognition particle protein -
  KBU60_RS02880 (KBU60_02880) rpsP 594465..594713 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  KBU60_RS02885 (KBU60_02885) rimM 594742..595290 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19006.71 Da        Isoelectric Point: 4.7134

>NTDB_id=557648 KBU60_RS02860 WP_025508497.1 589872..590390(+) (luxS) [Vibrio parahaemolyticus strain FB-11]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKSILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=557648 KBU60_RS02860 WP_025508497.1 589872..590390(+) (luxS) [Vibrio parahaemolyticus strain FB-11]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCGCCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTATGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAGCATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTACCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878