Detailed information NTG0557645

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KBU60_RS02745
• Genome accession: NZ_CP073068
• Coordinates: 567676..568665 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain FB-11
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 562676..573665

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KBU60_RS02710 (KBU60_02710)	ftsB	562684..562965 (+)	282	WP_005455577.1	cell division protein FtsB	-
KBU60_RS02715 (KBU60_02715)	ispD	562967..563671 (+)	705	WP_140288121.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KBU60_RS02720 (KBU60_02720)	ispF	563689..564165 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KBU60_RS02725 (KBU60_02725)	truD	564212..565255 (+)	1044	WP_140288120.1	tRNA pseudouridine(13) synthase TruD	-
KBU60_RS02730 (KBU60_02730)	surE	565255..566031 (+)	777	WP_020841269.1	5'/3'-nucleotidase SurE	-
KBU60_RS02735 (KBU60_02735)	-	566031..566657 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
KBU60_RS02740 (KBU60_02740)	-	566672..567595 (+)	924	WP_140288119.1	peptidoglycan DD-metalloendopeptidase family protein	-
KBU60_RS02745 (KBU60_02745)	rpoS	567676..568665 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
KBU60_RS02750 (KBU60_02750)	mutS	568745..571306 (-)	2562	WP_005478546.1	DNA mismatch repair protein MutS	-
KBU60_RS02755 (KBU60_02755)	pncC	571391..571873 (+)	483	WP_140288118.1	nicotinamide-nucleotide amidase	-
KBU60_RS02760 (KBU60_02760)	recA	572074..573117 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=557645 KBU60_RS02745 WP_005478537.1 567676..568665(+) (rpoS) [Vibrio parahaemolyticus strain FB-11]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=557645 KBU60_RS02745 WP_005478537.1 567676..568665(+) (rpoS) [Vibrio parahaemolyticus strain FB-11]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATTCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCTGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851