Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   KE627_RS09365 Genome accession   NZ_CP073066
Coordinates   1975125..1976936 (+) Length   603 a.a.
NCBI ID   WP_013727497.1    Uniprot ID   -
Organism   Lentilactobacillus buchneri strain ATCC 4005     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1970125..1981936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KE627_RS09345 (KE627_09345) - 1970170..1970862 (+) 693 WP_146971958.1 response regulator transcription factor -
  KE627_RS09350 (KE627_09350) - 1970859..1972169 (+) 1311 WP_013727494.1 HAMP domain-containing sensor histidine kinase -
  KE627_RS09355 (KE627_09355) - 1972257..1973795 (-) 1539 WP_013727495.1 gamma-glutamylcysteine synthetase -
  KE627_RS09360 (KE627_09360) - 1973951..1975090 (+) 1140 WP_013727496.1 competence protein CoiA family protein -
  KE627_RS09365 (KE627_09365) pepF 1975125..1976936 (+) 1812 WP_013727497.1 oligoendopeptidase F Regulator
  KE627_RS09370 (KE627_09370) - 1977010..1977630 (-) 621 WP_013727498.1 DsbA family protein -
  KE627_RS09375 (KE627_09375) - 1977845..1978498 (+) 654 WP_013727499.1 GTP pyrophosphokinase family protein -
  KE627_RS09380 (KE627_09380) - 1978476..1979288 (+) 813 WP_013727500.1 NAD kinase -
  KE627_RS09385 (KE627_09385) - 1979281..1980171 (+) 891 WP_013727501.1 RluA family pseudouridine synthase -
  KE627_RS09390 (KE627_09390) - 1980282..1981130 (+) 849 WP_013727502.1 methyltransferase domain-containing protein -
  KE627_RS09395 (KE627_09395) - 1981148..1981660 (+) 513 WP_013727503.1 tRNA (cytidine(34)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69687.82 Da        Isoelectric Point: 4.9685

>NTDB_id=557624 KE627_RS09365 WP_013727497.1 1975125..1976936(+) (pepF) [Lentilactobacillus buchneri strain ATCC 4005]
MPKPQELPLRKDVPEELTWDLTTIYPTDQEFETDYEAVQTGAKQFAELAGTIEKSAAALLTATERLMTLSRKLEKVYVYA
QLKNDQDTSEDKYQAMYSRAESLGAQFGAATAWFEPELLKVSDDQIKQFYQDQPKLADYRRFFDQTFKRRNHILSNDVEA
VLAGAGDIFSSGEKTFGILDNTDLSFPAVTDENGNQVKLSQGVYGILLESTKQSVRKEAFEKLYQVYRQFQHTLAATLTT
NVKNHNFKANIRHYNNALEAALADNEVPTDVYNNLIKVVNEHLDLLHRYVALRKKILGLDELHMYDMYTSLVGKKSPKYT
FEQSKQIALEALQVMGPDYVSHVKEEFNNRWIDVVENQFKRSGGYSSGTYDTNPYILLNWKDNLDNLYTLIHETGHSMHS
YYSHHNQPYQYGDYSIFVAEIASTTNENILTDYLLNKFKDDDEMKKFILNYYLDGFKGTVFRQTQFAEFEQYIHEQDAKG
QPLTANFMDDYYRNLNQKYYGDAVISDPQIGLEWSRIPHFYYNFYVYQYSTGFAAASTLADGIVNGGQANVDKYLNYLKS
GSSDTPTNVMKKAGVDMTQPEYLEKAFQIFEQRLDEFERLYNK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=557624 KE627_RS09365 WP_013727497.1 1975125..1976936(+) (pepF) [Lentilactobacillus buchneri strain ATCC 4005]
ATGCCAAAACCACAAGAATTACCGCTTAGAAAAGATGTTCCAGAAGAACTGACTTGGGATCTGACGACGATTTATCCAAC
CGATCAGGAATTTGAAACTGACTATGAAGCTGTTCAAACCGGTGCCAAACAATTCGCTGAATTAGCCGGAACCATTGAGA
AGAGCGCGGCCGCGCTGCTGACGGCAACTGAGCGTTTGATGACCTTAAGCCGAAAGCTTGAAAAAGTCTATGTCTACGCC
CAGTTGAAAAATGACCAGGATACCAGCGAAGACAAGTATCAGGCCATGTATTCCCGTGCGGAATCCTTGGGGGCTCAGTT
TGGAGCGGCGACTGCCTGGTTTGAACCGGAACTCCTCAAAGTTTCTGACGATCAAATCAAGCAGTTTTATCAGGATCAAC
CCAAACTGGCCGATTATCGACGGTTTTTCGATCAAACCTTTAAACGCCGTAATCATATTTTAAGCAATGATGTTGAAGCC
GTCCTGGCGGGGGCCGGCGATATTTTCTCGTCTGGAGAGAAAACCTTTGGCATTTTGGATAACACTGATCTTTCATTCCC
AGCAGTGACTGATGAGAATGGCAATCAGGTGAAGTTATCTCAAGGTGTTTATGGTATTTTATTGGAATCGACAAAGCAAA
GTGTGCGTAAAGAAGCGTTTGAAAAATTGTATCAAGTTTATCGTCAGTTCCAGCACACGCTGGCGGCAACACTGACCACT
AATGTCAAGAATCACAATTTCAAAGCCAACATCCGCCACTATAACAATGCTTTGGAGGCCGCTTTGGCTGATAACGAGGT
GCCGACAGACGTTTATAATAACCTGATCAAAGTGGTCAACGAGCACCTCGACCTGCTGCACAGGTACGTTGCTTTGCGTA
AAAAGATTCTGGGCCTTGATGAACTGCATATGTACGATATGTATACGTCCCTAGTTGGTAAAAAATCACCCAAGTATACG
TTTGAACAGTCCAAGCAAATCGCTTTGGAAGCTTTGCAGGTAATGGGGCCGGATTATGTCAGCCACGTTAAAGAGGAGTT
CAACAACCGTTGGATTGACGTTGTTGAAAATCAATTCAAAAGAAGCGGCGGCTATTCCTCAGGGACTTACGATACCAATC
CGTATATTTTACTGAATTGGAAGGATAATTTGGATAATCTCTACACGTTGATCCACGAAACCGGTCATAGTATGCACAGC
TACTATTCCCATCATAACCAGCCTTATCAGTATGGTGATTACTCCATTTTTGTCGCTGAAATTGCGTCCACGACCAACGA
GAACATCTTGACGGATTATCTCTTGAATAAATTTAAAGATGATGATGAAATGAAGAAATTTATTTTAAATTACTATCTGG
ATGGATTTAAGGGAACGGTTTTCCGCCAAACTCAGTTTGCTGAATTTGAACAATACATTCATGAACAGGATGCAAAAGGT
CAACCATTAACCGCCAACTTTATGGATGATTACTATCGCAATTTAAATCAAAAATACTATGGTGATGCCGTGATTTCTGA
CCCTCAGATTGGCCTTGAATGGTCACGGATTCCACATTTCTATTACAACTTCTACGTTTATCAATATTCCACCGGCTTTG
CTGCCGCATCGACATTGGCTGATGGCATTGTGAACGGCGGCCAGGCCAACGTTGATAAATATTTGAACTACCTCAAATCA
GGCAGTTCGGACACGCCAACCAACGTCATGAAAAAAGCCGGCGTTGACATGACGCAACCGGAATATCTTGAGAAGGCCTT
CCAGATTTTTGAGCAGCGTCTGGATGAATTTGAGCGTTTGTACAACAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.03

98.507

0.522