Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   L1O93_RS08800 Genome accession   NZ_CP091022
Coordinates   1866491..1867918 (-) Length   475 a.a.
NCBI ID   WP_000980605.1    Uniprot ID   -
Organism   Escherichia coli strain STEC276     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1861491..1872918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O93_RS08770 yeeZ 1861545..1862369 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  L1O93_RS08775 yeeY 1862415..1863344 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  L1O93_RS08780 yoeI 1863559..1863621 (+) 63 WP_010723108.1 membrane protein YoeI -
  L1O93_RS08785 plaP 1863611..1864969 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  L1O93_RS08790 tsuA 1865149..1866207 (+) 1059 WP_000492330.1 thiosulfate utilization transporter TsuA/YeeE -
  L1O93_RS08795 tsuB 1866221..1866448 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  L1O93_RS08800 sbcB 1866491..1867918 (-) 1428 WP_000980605.1 exodeoxyribonuclease I Machinery gene
  L1O93_RS08805 dacD 1868127..1869293 (+) 1167 WP_001446926.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  L1O93_RS08810 sbmC 1869412..1869885 (+) 474 WP_001105407.1 DNA gyrase inhibitor SbmC -
  L1O93_RS08815 yeeA 1870083..1871141 (+) 1059 WP_001200895.1 FUSC family protein -
  L1O93_RS08820 tmaR 1871313..1871642 (+) 330 WP_000450409.1 DUF496 family protein -
  L1O93_RS08825 - 1871743..1872108 (-) 366 WP_001280454.1 EutP/PduV family microcompartment system protein -
  L1O93_RS08830 - 1872379..1872768 (-) 390 WP_077875581.1 transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.69 Da        Isoelectric Point: 5.3480

>NTDB_id=557547 L1O93_RS08800 WP_000980605.1 1866491..1867918(-) (sbcB) [Escherichia coli strain STEC276]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
NRLGINRQHCLDNLKILRENPQVREEVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=557547 L1O93_RS08800 WP_000980605.1 1866491..1867918(-) (sbcB) [Escherichia coli strain STEC276]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
AACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAGAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579