Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   J7D36_RS16965 Genome accession   NZ_CP073060
Coordinates   3597599..3597925 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain DETAB-P39     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3592599..3602925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D36_RS16945 (J7D36_16945) - 3592700..3593329 (-) 630 WP_000219972.1 FHA domain-containing protein -
  J7D36_RS16950 (J7D36_16950) gspD 3593370..3595646 (-) 2277 WP_021510874.1 type II secretion system secretin GspD -
  J7D36_RS16955 (J7D36_16955) - 3595688..3596524 (-) 837 WP_021510873.1 type II secretion system protein N -
  J7D36_RS16960 (J7D36_16960) gspN 3596524..3597267 (-) 744 WP_000730343.1 type II secretion system protein N -
  J7D36_RS16965 (J7D36_16965) hns 3597599..3597925 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  J7D36_RS16970 (J7D36_16970) - 3598120..3598560 (-) 441 WP_000661569.1 acyl-CoA thioesterase -
  J7D36_RS16975 (J7D36_16975) - 3598568..3599761 (-) 1194 WP_021510872.1 hypothetical protein -
  J7D36_RS16980 (J7D36_16980) - 3599771..3600610 (-) 840 WP_001230201.1 hypothetical protein -
  J7D36_RS16985 (J7D36_16985) - 3600619..3601386 (-) 768 WP_000897413.1 uroporphyrinogen-III synthase -
  J7D36_RS16990 (J7D36_16990) hemC 3601391..3602308 (-) 918 WP_031945568.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=557528 J7D36_RS16965 WP_000801427.1 3597599..3597925(-) (hns) [Acinetobacter baumannii strain DETAB-P39]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=557528 J7D36_RS16965 WP_000801427.1 3597599..3597925(-) (hns) [Acinetobacter baumannii strain DETAB-P39]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCATATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1