Detailed information NTG0055749

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NCGM1900_RS13185
• Genome accession: NZ_AP014622
• Coordinates: 2749634..2750638 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain NCGM1900
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2744634..2755638

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NCGM1900_RS13155 (NCGM1900_2648)	fghA	2744726..2745577 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
NCGM1900_RS13160 (NCGM1900_2649)	ispF	2745648..2746121 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NCGM1900_RS13165 (NCGM1900_2650)	truD	2746118..2747185 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
NCGM1900_RS13170 (NCGM1900_2651)	surE	2747173..2747922 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
NCGM1900_RS13175 (NCGM1900_2652)	-	2747955..2748590 (+)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
NCGM1900_RS13180 (NCGM1900_2653)	-	2748636..2749529 (+)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
NCGM1900_RS13185 (NCGM1900_2654)	rpoS	2749634..2750638 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
NCGM1900_RS13190 (NCGM1900_2655)	fdxA	2751065..2751388 (-)	324	WP_003092272.1	ferredoxin FdxA	-
NCGM1900_RS13195 (NCGM1900_2656)	mutS	2751455..2754022 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
NCGM1900_RS13200 (NCGM1900_2658)	-	2754148..2755155 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=55749 NCGM1900_RS13185 WP_003113871.1 2749634..2750638(+) (rpoS) [Pseudomonas aeruginosa strain NCGM1900]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=55749 NCGM1900_RS13185 WP_003113871.1 2749634..2750638(+) (rpoS) [Pseudomonas aeruginosa strain NCGM1900]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653