Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SM57_RS17195 Genome accession   NZ_CP073054
Coordinates   3418884..3419480 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain MGH83     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3413884..3424480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM57_RS17180 helD 3414092..3416146 (-) 2055 WP_004176653.1 DNA helicase IV -
  SM57_RS17185 - 3416271..3416717 (+) 447 WP_002898425.1 YccF domain-containing protein -
  SM57_RS17190 yccS 3416735..3418870 (+) 2136 WP_002898422.1 YccS family putative transporter -
  SM57_RS17195 sxy/tfoX 3418884..3419480 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  SM57_RS17200 sulA 3419829..3420338 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  SM57_RS17205 ompA 3420691..3421761 (+) 1071 WP_002898408.1 porin OmpA -
  SM57_RS17210 matP 3421893..3422345 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  SM57_RS17215 - 3422531..3424288 (+) 1758 WP_004191101.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=557480 SM57_RS17195 WP_004179217.1 3418884..3419480(-) (sxy/tfoX) [Klebsiella pneumoniae strain MGH83]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=557480 SM57_RS17195 WP_004179217.1 3418884..3419480(-) (sxy/tfoX) [Klebsiella pneumoniae strain MGH83]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51