Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SK35_RS15880 Genome accession   NZ_CP073048
Coordinates   3274890..3275504 (-) Length   204 a.a.
NCBI ID   WP_003831996.1    Uniprot ID   A0A5A9E513
Organism   Citrobacter sp. MGH105     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3269890..3280504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK35_RS15865 helD 3270114..3272168 (-) 2055 WP_048214504.1 DNA helicase IV -
  SK35_RS15870 - 3272294..3272740 (+) 447 WP_003831998.1 YccF domain-containing protein -
  SK35_RS15875 yccS 3272759..3274912 (+) 2154 WP_003831997.1 YccS family putative transporter -
  SK35_RS15880 sxy/tfoX 3274890..3275504 (-) 615 WP_003831996.1 TfoX/Sxy family DNA transformation protein Regulator
  SK35_RS15885 sulA 3275723..3276232 (+) 510 WP_008784287.1 SOS-induced cell division inhibitor SulA -
  SK35_RS15890 ompA 3276590..3277648 (+) 1059 WP_048214505.1 porin OmpA -
  SK35_RS15895 matP 3277737..3278189 (-) 453 WP_032942905.1 macrodomain Ter protein MatP -
  SK35_RS15900 - 3278375..3280135 (+) 1761 WP_048214506.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.54 Da        Isoelectric Point: 8.6049

>NTDB_id=557457 SK35_RS15880 WP_003831996.1 3274890..3275504(-) (sxy/tfoX) [Citrobacter sp. MGH105]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=557457 SK35_RS15880 WP_003831996.1 3274890..3275504(-) (sxy/tfoX) [Citrobacter sp. MGH105]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGCTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGCTGGTGTCGTTATCGCGATATTCATTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGTTGA
ATGAAGCTGGAATTAAAGATGAGGGGACTATGCGGTCGTTAGGAGCACAAATGTGCTGGCTGAAACTTAGGCAAAATAAT
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9E513

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.647

100

0.676