Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SK33_RS15100 Genome accession   NZ_CP073043
Coordinates   3110722..3111336 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter sp. MGH103     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3105722..3116336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK33_RS15085 helD 3105946..3108000 (-) 2055 WP_048219154.1 DNA helicase IV -
  SK33_RS15090 - 3108126..3108572 (+) 447 WP_003035892.1 YccF domain-containing protein -
  SK33_RS15095 yccS 3108591..3110744 (+) 2154 WP_032941200.1 YccS family putative transporter -
  SK33_RS15100 sxy/tfoX 3110722..3111336 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  SK33_RS15105 sulA 3111554..3112063 (+) 510 WP_032948945.1 SOS-induced cell division inhibitor SulA -
  SK33_RS15110 ompA 3112421..3113479 (+) 1059 WP_003836839.1 porin OmpA -
  SK33_RS15115 matP 3113568..3114020 (-) 453 WP_048219155.1 macrodomain Ter protein MatP -
  SK33_RS15120 - 3114206..3115966 (+) 1761 WP_003035878.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=557434 SK33_RS15100 WP_003035889.1 3110722..3111336(-) (sxy/tfoX) [Citrobacter sp. MGH103]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=557434 SK33_RS15100 WP_003035889.1 3110722..3111336(-) (sxy/tfoX) [Citrobacter sp. MGH103]
ATGAAAGAGCTTTCTTATGCACGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACTGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAATGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACAATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACACGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686