Detailed information NTG0557414

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: KBP46_RS18480
• Genome accession: NZ_CP073027
• Coordinates: 3991242..3992591 (-)
• Length: 449 a.a.
• NCBI ID: WP_062675900.1
• Uniprot ID: A0A420CHR1
• Organism: Chryseobacterium sp. PCH239
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3986242..3997591

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KBP46_RS18465 (KBP46_18465)	-	3986710..3989925 (+)	3216	WP_216443863.1	S8 family serine peptidase	-
KBP46_RS18470 (KBP46_18470)	-	3990048..3990521 (+)	474	WP_228436832.1	DUF6702 family protein	-
KBP46_RS18475 (KBP46_18475)	-	3990527..3991120 (-)	594	WP_062675899.1	ACP phosphodiesterase	-
KBP46_RS18480 (KBP46_18480)	radA	3991242..3992591 (-)	1350	WP_062675900.1	DNA repair protein RadA	Machinery gene
KBP46_RS18485 (KBP46_18485)	-	3992730..3993299 (+)	570	WP_123279136.1	YceI family protein	-
KBP46_RS18490 (KBP46_18490)	-	3993525..3995132 (+)	1608	WP_110008139.1	CTP synthase	-
KBP46_RS18495 (KBP46_18495)	yidC	3995311..3997110 (+)	1800	WP_062675903.1	membrane protein insertase YidC	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49957.53 Da
• Isoelectric Point: 6.5083

>NTDB_id=557414 KBP46_RS18480 WP_062675900.1 3991242..3992591(-) (radA) [Chryseobacterium sp. PCH239]
MAKLKTAYFCQNCGTQYPQWLGQCKNCGEWNTLVEEVVEKPSHKTPPFSKTKQHVINIVEVETSEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKVFYVSGEESASQIKMRADRLTDIQNPNCFLFTETSLEKILHEAKKL
EPDFMIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVIASVLSSNEDIAISEHYCFAGEIGLSGEIRPV
AQIEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKIEDFHERLF

Nucleotide

• Length: 1350 bp

>NTDB_id=557414 KBP46_RS18480 WP_062675900.1 3991242..3992591(-) (radA) [Chryseobacterium sp. PCH239]
ATGGCAAAACTGAAAACAGCATATTTCTGTCAAAACTGCGGAACCCAGTATCCTCAATGGCTGGGACAATGTAAAAACTG
TGGAGAATGGAACACTTTAGTAGAAGAGGTTGTAGAGAAACCTTCTCATAAAACTCCTCCTTTTTCAAAAACGAAACAAC
ATGTTATCAATATTGTTGAAGTAGAAACCAGCGAAGAACCTAGGATAAAAACCCCTTCTGAAGAACTGAACCGTGTTTTA
GGAGGCGGCATCGTTTTGGGGTCTGTAACTTTGATTGGTGGCGAACCGGGCATCGGAAAATCTACCCTTCTGCTTCAGCT
TGCTTTGAAAATGAAGAAAAAAGTTTTCTATGTTTCTGGTGAAGAAAGTGCTTCTCAGATCAAAATGAGAGCAGACAGAC
TTACGGATATTCAAAATCCGAACTGTTTCCTTTTCACAGAAACATCATTGGAAAAAATTCTTCATGAGGCCAAAAAACTG
GAGCCGGATTTCATGATTATTGATTCCATTCAAACGCTGCAGTCTCAATTGATAGAAAGTTCCCCGGGAACCGTATCCCA
AATCCGGGAATGCTCCAATGAGATCATCAAATATGCCAAAGAAAACAATACGCCTGTCTTTCTTGTAGGACATATTACCA
AAGACGGCCAAATTGCCGGACCAAAAGTACTGGAGCACATGGTAGATGTTGTTCTGAATTTTGATGGAGACCGAAATCAT
CTGTTCAGATTATTGAGAGCTAATAAAAACCGTTTTGGTTCTACCTCCGAAATTGGAATTTATGAAATGATTTCTCAGGG
ATTAAAAGAGATTAAAAACCCTTCGGAAATACTGATCACCAAGAAGTTTGAGGAACTTTCAGGGAACTCTGTTGCAGTAA
CTCTGGAAGGAAACAGACCGATGCTTCTTGAAATACAGGCATTGGTAAGTACTGCCGTTTATGGTACTCCTCAAAGAAGC
AGCACCGGTTTTGATTCCAAAAGGCTGAATATGCTTTTGGCCGTACTGGAAAAAAGAGCTGGTTTTCAATTGGGAGCAAA
AGACGTTTTCCTGAATATTACCGGAGGAATAAAAACAGATGATCCGGCACTGGATCTGGCGGTCATTGCTTCTGTTCTTT
CTTCCAATGAAGATATTGCTATTTCTGAACATTACTGTTTTGCCGGAGAAATCGGATTAAGTGGCGAAATCCGTCCGGTA
GCACAGATTGAGCAGAGAATTACTGAGGCTGAAAAATTGGGGTATGAGAAAATATTTGTATCCAATCTTAATAAAATCCC
GAAAAGAAAATTTGGAATCAAGATTGAAGAAGTGAGTAAAATTGAAGATTTTCATGAGAGACTGTTCTAG

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (338-423)

• AAA domain (AAA_25) (64-217)

3D structure

• AlphaFold DB: A0A420CHR1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.336	100	0.497
radA	Streptococcus pneumoniae Rx1	48.684	100	0.494
radA	Streptococcus pneumoniae D39	48.684	100	0.494
radA	Streptococcus pneumoniae R6	48.684	100	0.494
radA	Streptococcus pneumoniae TIGR4	48.684	100	0.494
radA	Streptococcus mitis NCTC 12261	48.684	100	0.494
radA	Streptococcus mitis SK321	50.591	94.209	0.477