Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   KAJ74_RS07520 Genome accession   NZ_CP073012
Coordinates   1562095..1563444 (+) Length   449 a.a.
NCBI ID   WP_031797628.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA14+     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1557095..1568444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAJ74_RS07490 (KAJ74_07490) - 1557144..1557710 (-) 567 WP_031869230.1 hypothetical protein -
  KAJ74_RS07495 (KAJ74_07495) - 1557894..1558895 (+) 1002 WP_113342717.1 hypothetical protein -
  KAJ74_RS07500 (KAJ74_07500) - 1559077..1559367 (+) 291 WP_113342716.1 DUF1413 domain-containing protein -
  KAJ74_RS07505 (KAJ74_07505) - 1559415..1561160 (+) 1746 WP_224742988.1 DUF927 domain-containing protein -
  KAJ74_RS07510 (KAJ74_07510) - 1561227..1561544 (+) 318 WP_031869226.1 hypothetical protein -
  KAJ74_RS07515 (KAJ74_07515) - 1561623..1561901 (+) 279 WP_031797629.1 hypothetical protein -
  KAJ74_RS07520 (KAJ74_07520) ccrA 1562095..1563444 (+) 1350 WP_031797628.1 recombinase family protein Machinery gene
  KAJ74_RS07525 (KAJ74_07525) ccrB 1563466..1565094 (+) 1629 WP_031869225.1 recombinase family protein Machinery gene
  KAJ74_RS07530 (KAJ74_07530) - 1565635..1566564 (+) 930 WP_002506256.1 2-dehydropantoate 2-reductase -
  KAJ74_RS07535 (KAJ74_07535) - 1567130..1567480 (+) 351 WP_113342715.1 SAUGI family uracil-DNA glycosylase inhibitor -
  KAJ74_RS07540 (KAJ74_07540) - 1567565..1567876 (+) 312 WP_113342714.1 DUF960 family protein -
  KAJ74_RS07545 (KAJ74_07545) - 1567895..1568407 (+) 513 WP_113342713.1 DUF1643 domain-containing protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52553.34 Da        Isoelectric Point: 10.2599

>NTDB_id=557328 KAJ74_RS07520 WP_031797628.1 1562095..1563444(+) (ccrA) [Staphylococcus aureus strain SA14+]
MNQAIGYLRQSTTKQQSLAAQKQTIESLAQKHQIKHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKHHVHILSVHDGYFDMDKSFDRLKLNIFISLAELESDNIGEQVKNGLKEKANQGKLITTHAPFGYRYH
NGTFTINTSEAHTVKAVFNYYLQGYGYKKISQRLETDSRMINRMPYQVRNIIINPNYCGRVINQYGQHDNMFPAIVSTTI
YEEAQAMRKQKQVERKPSKNRLKQKIKCPYCHSTLTNVTIRKPNRSLRYYVCSQNMNNARFVCNFKGINAQELEKQVLDI
CKEFFQNKQFHQKINSRIRQQLKQHQQLESQNNITQAQLIDKLAQGLIDAEAFKKQSQSITQNRKPLRSISEDQLQVSLQ
NVFQKSFTLNMLYPYIDEIHITKNKKLVGIYFKNEPLNIVKQQMQSSIV

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=557328 KAJ74_RS07520 WP_031797628.1 1562095..1563444(+) (ccrA) [Staphylococcus aureus strain SA14+]
ATGAATCAAGCTATTGGCTACTTACGTCAAAGTACAACCAAACAACAATCACTTGCAGCACAGAAACAAACCATTGAATC
ATTAGCCCAAAAACATCAGATCAAACACATTACATTCTATAGCGATAAACAATCTGGACGCACTGACAAGCGTAATGGTT
ACCAACAAATTACTGAACTAATTCAACAAGGACAATGTGACGTTTTATGTTGTTATCGTCTGAATCGACTACATCGAAAT
CTAAAAAATGCTTTAAAACTTATGAAACTATGCCAAAAGCATCATGTTCACATATTAAGTGTACATGACGGATATTTCGA
CATGGATAAATCTTTTGATCGTCTCAAACTAAATATTTTCATCAGTTTGGCCGAACTTGAATCCGATAATATTGGTGAAC
AAGTCAAAAACGGCCTCAAGGAAAAAGCGAATCAAGGCAAACTGATTACGACACATGCACCCTTTGGCTATCGTTATCAT
AATGGCACATTCACGATAAACACATCCGAAGCACATACTGTGAAAGCTGTATTCAACTACTATCTTCAGGGTTATGGATA
CAAAAAGATTTCACAACGCTTAGAAACCGACTCAAGAATGATAAATCGAATGCCCTATCAAGTTCGTAATATTATCATTA
ACCCTAATTACTGTGGACGAGTTATTAATCAGTATGGACAACATGACAACATGTTCCCAGCTATTGTCAGTACAACGATA
TATGAAGAAGCACAAGCTATGAGAAAGCAGAAACAAGTCGAACGTAAACCTTCAAAAAATCGACTCAAACAAAAGATCAA
ATGTCCCTATTGTCATTCAACACTTACAAATGTAACCATACGAAAACCAAATCGTTCATTGCGTTACTATGTCTGCTCAC
AGAATATGAATAACGCTCGCTTTGTTTGTAACTTCAAGGGAATAAATGCGCAAGAATTAGAAAAACAAGTCTTAGACATA
TGCAAAGAATTCTTTCAAAACAAACAATTCCATCAAAAGATAAATAGCAGAATCAGACAACAACTCAAACAACATCAACA
GTTAGAATCACAAAATAATATTACCCAAGCACAACTAATAGATAAATTGGCCCAGGGCTTAATTGATGCTGAAGCATTCA
AAAAACAGTCTCAATCAATAACTCAAAATCGTAAACCTCTACGCTCAATAAGCGAGGATCAATTACAAGTATCGCTACAA
AATGTATTTCAGAAAAGTTTCACGTTAAACATGCTGTATCCATACATCGATGAAATTCATATTACTAAAAATAAAAAGCT
AGTTGGTATCTATTTCAAAAATGAGCCATTGAATATTGTAAAACAACAGATGCAATCATCAATTGTCTAA

Domains

Predicted by InterproScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-320)

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(169-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

77.506

100

0.775
  ccrA Staphylococcus aureus N315

69.933

100

0.699