Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L1O96_RS16710 Genome accession   NZ_CP091016
Coordinates   3266486..3267115 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain STEC306     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3261486..3272115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O96_RS16695 helD 3261728..3263782 (-) 2055 WP_000420536.1 DNA helicase IV -
  L1O96_RS16700 yccF 3263905..3264351 (+) 447 WP_001261235.1 YccF domain-containing protein -
  L1O96_RS16705 yccS 3264361..3266523 (+) 2163 WP_000875023.1 YccS family putative transporter -
  L1O96_RS16710 sxy/tfoX 3266486..3267115 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  L1O96_RS16715 sulA 3267334..3267843 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  L1O96_RS16720 ompA 3268200..3269252 (+) 1053 WP_001361736.1 porin OmpA -
  L1O96_RS16725 matP 3269328..3269780 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  L1O96_RS16730 ycbZ 3269966..3271726 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=557315 L1O96_RS16710 WP_000839153.1 3266486..3267115(-) (sxy/tfoX) [Escherichia coli strain STEC306]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=557315 L1O96_RS16710 WP_000839153.1 3266486..3267115(-) (sxy/tfoX) [Escherichia coli strain STEC306]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1