Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KBP50_RS15515 Genome accession   NZ_CP073011
Coordinates   3345839..3346792 (-) Length   317 a.a.
NCBI ID   WP_050351359.1    Uniprot ID   A0A0L0QJW3
Organism   Virgibacillus pantothenticus strain DSM 26     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3340839..3351792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBP50_RS15495 (KBP50_15495) - 3341387..3342112 (-) 726 WP_050351356.1 SurA N-terminal domain-containing protein -
  KBP50_RS15500 (KBP50_15500) - 3342875..3343843 (-) 969 WP_128743379.1 siderophore ABC transporter substrate-binding protein -
  KBP50_RS15505 (KBP50_15505) - 3344150..3344905 (-) 756 WP_050351357.1 ABC transporter ATP-binding protein -
  KBP50_RS15510 (KBP50_15510) - 3344899..3345849 (-) 951 WP_050351358.1 iron chelate uptake ABC transporter family permease subunit -
  KBP50_RS15515 (KBP50_15515) ceuB 3345839..3346792 (-) 954 WP_050351359.1 ABC transporter permease Machinery gene
  KBP50_RS15520 (KBP50_15520) - 3347233..3347982 (-) 750 WP_328219483.1 DsbA family oxidoreductase -
  KBP50_RS15525 (KBP50_15525) - 3348462..3349283 (-) 822 WP_232231430.1 MBL fold metallo-hydrolase -
  KBP50_RS15530 (KBP50_15530) - 3349704..3350153 (-) 450 WP_050351361.1 DUF2188 domain-containing protein -
  KBP50_RS15535 (KBP50_15535) fni 3350518..3351573 (-) 1056 WP_050351362.1 type 2 isopentenyl-diphosphate Delta-isomerase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35081.41 Da        Isoelectric Point: 9.9246

>NTDB_id=557304 KBP50_RS15515 WP_050351359.1 3345839..3346792(-) (ceuB) [Virgibacillus pantothenticus strain DSM 26]
MKIRYLVVMLIILSFVSIFVGVSNISPLDIFNLSEEQAKVLLISRVPRLFSILIAGMSMSICGLIMQQLSRNKFVSPTTA
GTLDSARLGILVSMVLFTSANPFEKMLVSFAFALLGTFAFMKILEKIKFKDAIFIPLIGLMFGNIVSSMSTFIAYRYDLI
QNISSWMQGDFSMIMTGNYELMFVSIPILIVAFFYANKFTIAGMGEDFSKNLGLNYRQVVNLGLVIVALVTASVVLAVGV
IPFLGLIIPNIVTIYQGDHLKKSLLHTALLGAIFVLVCDIIGRVIIYPYEIPISLTVGVIGSGLFIYLLFRRKKYGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=557304 KBP50_RS15515 WP_050351359.1 3345839..3346792(-) (ceuB) [Virgibacillus pantothenticus strain DSM 26]
ATGAAAATACGTTACTTAGTGGTCATGTTGATTATACTTTCCTTTGTATCTATCTTTGTTGGTGTATCGAATATTTCTCC
GTTAGATATATTTAATCTATCGGAGGAGCAGGCAAAAGTATTATTGATTTCAAGAGTCCCTAGACTTTTCAGTATTTTAA
TAGCTGGGATGAGCATGAGTATTTGTGGGCTAATTATGCAGCAGTTAAGCAGAAATAAATTTGTTTCACCCACAACAGCA
GGAACATTGGATTCAGCAAGGTTAGGAATATTAGTATCAATGGTGCTATTTACTTCCGCTAATCCATTTGAAAAGATGCT
TGTTTCATTTGCCTTTGCATTATTAGGTACATTTGCGTTTATGAAGATACTGGAAAAGATAAAATTTAAAGATGCGATAT
TTATCCCTTTAATTGGATTAATGTTTGGAAACATTGTTAGCTCTATGTCTACTTTTATAGCATATCGCTACGATTTAATC
CAAAACATCTCGTCATGGATGCAAGGAGATTTCTCCATGATCATGACAGGGAATTATGAGCTCATGTTTGTCAGCATTCC
AATTTTAATCGTTGCCTTTTTTTATGCGAATAAATTTACTATTGCTGGTATGGGTGAGGACTTTTCCAAGAACTTGGGAT
TAAATTATCGGCAGGTCGTCAATTTGGGACTTGTGATTGTAGCACTTGTAACCGCCTCAGTTGTCTTGGCAGTAGGAGTT
ATCCCATTTTTAGGTCTTATCATTCCTAATATTGTAACCATTTATCAAGGAGATCATTTGAAAAAAAGCTTGTTACATAC
AGCATTGTTAGGAGCAATATTTGTTCTCGTATGTGATATTATTGGCAGGGTTATTATTTATCCATATGAAATTCCGATTA
GCTTGACGGTTGGGGTCATCGGTAGTGGATTATTTATTTATCTGCTATTTAGGAGAAAAAAATATGGGCTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L0QJW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

99.685

0.527