Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SK40_RS02965 Genome accession   NZ_CP073007
Coordinates   572240..572854 (-) Length   204 a.a.
NCBI ID   WP_003831996.1    Uniprot ID   A0A5A9E513
Organism   Citrobacter sp. BIDMC108     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 567240..577854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK40_RS02950 helD 567464..569518 (-) 2055 WP_048227016.1 DNA helicase IV -
  SK40_RS02955 - 569644..570090 (+) 447 WP_003831998.1 YccF domain-containing protein -
  SK40_RS02960 yccS 570109..572262 (+) 2154 WP_003831997.1 YccS family putative transporter -
  SK40_RS02965 sxy/tfoX 572240..572854 (-) 615 WP_003831996.1 TfoX/Sxy family DNA transformation protein Regulator
  SK40_RS02970 sulA 573072..573581 (+) 510 WP_008784287.1 SOS-induced cell division inhibitor SulA -
  SK40_RS02975 ompA 573939..574997 (+) 1059 WP_048227017.1 porin OmpA -
  SK40_RS02980 matP 575086..575538 (-) 453 WP_032942905.1 macrodomain Ter protein MatP -
  SK40_RS02985 - 575724..577484 (+) 1761 WP_048227018.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.54 Da        Isoelectric Point: 8.6049

>NTDB_id=557255 SK40_RS02965 WP_003831996.1 572240..572854(-) (sxy/tfoX) [Citrobacter sp. BIDMC108]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=557255 SK40_RS02965 WP_003831996.1 572240..572854(-) (sxy/tfoX) [Citrobacter sp. BIDMC108]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCTAATGGTGAGCTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGTTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAGAAACAAAGTCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGTTGA
ATGAAGCTGGAATTAAAGATGAGGGGACCATGCGATCGTTGGGAGCACAAATGTGCTGGCTGAAACTTAGGCAAAATAAT
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9E513

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.647

100

0.676