Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   L1A13_RS08760 Genome accession   NZ_CP090889
Coordinates   1705450..1706160 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain CH2439     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1700450..1711160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A13_RS08745 (L1A13_08745) - 1700991..1701239 (-) 249 WP_000364990.1 YneF family protein -
  L1A13_RS08750 (L1A13_08750) treC 1701495..1703120 (-) 1626 WP_000171215.1 alpha,alpha-phosphotrehalase -
  L1A13_RS08755 (L1A13_08755) treP 1703298..1705265 (-) 1968 WP_000514312.1 PTS system trehalose-specific EIIBC component -
  L1A13_RS08760 (L1A13_08760) treR 1705450..1706160 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  L1A13_RS08765 (L1A13_08765) - 1706315..1707650 (+) 1336 Protein_1738 ISL3 family transposase -
  L1A13_RS08770 (L1A13_08770) - 1707725..1708651 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein -
  L1A13_RS08775 (L1A13_08775) amiE 1708662..1709729 (-) 1068 WP_000159555.1 ABC transporter ATP-binding protein Regulator
  L1A13_RS08780 (L1A13_08780) amiD 1709738..1710664 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=557231 L1A13_RS08760 WP_000760673.1 1705450..1706160(+) (treR) [Streptococcus pneumoniae strain CH2439]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=557231 L1A13_RS08760 WP_000760673.1 1705450..1706160(+) (treR) [Streptococcus pneumoniae strain CH2439]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593