Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   L1A13_RS07520 Genome accession   NZ_CP090889
Coordinates   1463814..1465781 (-) Length   655 a.a.
NCBI ID   WP_000058255.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain CH2439     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1458814..1470781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A13_RS07495 (L1A13_07495) - 1459016..1459813 (-) 798 WP_000881171.1 Nif3-like dinuclear metal center hexameric protein -
  L1A13_RS07500 (L1A13_07500) - 1459800..1460477 (-) 678 WP_000624099.1 tRNA (adenine(22)-N(1))-methyltransferase TrmK -
  L1A13_RS07505 (L1A13_07505) - 1461027..1461272 (+) 246 WP_001867917.1 hypothetical protein -
  L1A13_RS07510 (L1A13_07510) - 1461332..1462018 (+) 687 WP_224757329.1 protein kinase family protein -
  L1A13_RS07515 (L1A13_07515) - 1462092..1463440 (-) 1349 Protein_1488 IS3 family transposase -
  L1A13_RS07520 (L1A13_07520) recP/tkt 1463814..1465781 (-) 1968 WP_000058255.1 transketolase Machinery gene
  L1A13_RS07525 (L1A13_07525) alsE 1465818..1466513 (-) 696 WP_000086494.1 D-allulose 6-phosphate 3-epimerase -
  L1A13_RS07530 (L1A13_07530) - 1466524..1467609 (-) 1086 WP_000912158.1 PTS fructose transporter subunit IIC -
  L1A13_RS07535 (L1A13_07535) - 1467635..1467946 (-) 312 WP_000706299.1 PTS fructose transporter subunit IIB -
  L1A13_RS07540 (L1A13_07540) - 1467974..1468423 (-) 450 WP_000402984.1 fructose PTS transporter subunit IIA -
  L1A13_RS07545 (L1A13_07545) - 1468401..1468829 (-) 429 WP_001061749.1 PTS sugar transporter subunit IIA -
  L1A13_RS07550 (L1A13_07550) - 1468822..1470285 (-) 1464 WP_000087918.1 PRD domain-containing protein -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 70858.70 Da        Isoelectric Point: 4.9703

>NTDB_id=557221 L1A13_RS07520 WP_000058255.1 1463814..1465781(-) (recP/tkt) [Streptococcus pneumoniae strain CH2439]
MSLQSVNAIRFLGVDAINKSNSGHPGIVMGAAPMAYSLFTKHLRITPEQPNWINRDRFILSAGHGSMLLYALLHLTGYKD
VSMDEIKNFRQWGSKTPGHPEVTHTSGVDATSGPLGQGISTAVGFAQAERFLAAKYNKDGFPIFDHYTYVIAGDGDFMEG
VSAEAASYAGHQALDKLIVLYDSNDICLDGETKDTFSENVRARYDAYGWHTVLVEDGTDLAAISTAIETAKFSGKPSLIE
VKTVIGYGSPNKSGTNAVHGAPLGAEETGATRKFLGWDYDPFEVPEEVYSDFKTNVADRGQEAYDAWASLVSDYKVAYPE
VASEIDAIVAGKSPVTITEKDFPVYENGFSQATRNSSQDAINTAAVLPTFLGGSADLAHSNMTYIKADGLQDKYNPLNRN
IQFGVREFVMGTILNGMALHGGLRVYGGTFFVFSDYVKAAIRLSAIQELPVTYVFTHDSIAVGEDGPTHEPVEHLAGLRS
MPNLTVIRPADARETQATWHHALTSTTTPTVIVLTRQNLVVEEGTDFGKVAKGAYVVYDTPGFDTIIIATGSEVNLAIKA
AKELVLQGGKVRVVSMPSTELFDAQDATYKEDILPSKTRRRVAIEMAATQSWYKYVGLDGAVIGIDIFGASAPAQTVIDN
YGFTVENIVAQVKSL

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=557221 L1A13_RS07520 WP_000058255.1 1463814..1465781(-) (recP/tkt) [Streptococcus pneumoniae strain CH2439]
ATGTCACTACAATCAGTTAACGCCATTCGTTTTCTTGGCGTAGATGCTATTAACAAATCTAATTCTGGTCACCCGGGAAT
CGTCATGGGTGCTGCGCCAATGGCTTATAGCCTATTTACAAAGCACCTTAGAATTACACCTGAGCAGCCAAACTGGATTA
ACCGAGATCGCTTTATCTTGTCTGCGGGTCATGGATCAATGCTACTGTATGCTCTCTTGCATTTAACAGGGTATAAGGAT
GTATCCATGGACGAGATTAAAAATTTCCGGCAATGGGGATCTAAGACACCTGGTCATCCTGAAGTGACGCATACGTCTGG
TGTGGATGCGACATCTGGTCCGCTTGGTCAGGGGATTTCTACTGCCGTTGGTTTCGCCCAAGCAGAGCGTTTTTTAGCTG
CTAAGTACAACAAAGATGGTTTTCCTATTTTTGACCATTATACTTATGTTATCGCTGGAGACGGTGACTTCATGGAAGGA
GTGTCTGCGGAGGCGGCTTCTTATGCAGGTCATCAAGCTTTAGATAAGCTTATCGTCCTCTACGACTCCAACGATATCTG
CTTGGATGGTGAGACCAAAGATACTTTCTCTGAAAATGTTCGCGCCCGTTACGATGCTTATGGTTGGCATACAGTTCTGG
TAGAAGATGGAACAGATTTAGCAGCAATTTCTACAGCAATTGAGACGGCCAAGTTTTCTGGTAAGCCGAGTTTGATTGAA
GTGAAAACGGTAATTGGTTACGGCTCACCCAATAAAAGTGGTACAAATGCTGTTCATGGTGCACCACTAGGAGCAGAAGA
AACAGGAGCAACTCGTAAGTTTTTGGGATGGGATTACGATCCATTTGAAGTACCAGAGGAAGTATATTCTGATTTCAAGA
CAAATGTAGCGGATCGTGGTCAGGAGGCATACGATGCTTGGGCTAGTTTGGTGTCTGATTACAAGGTTGCTTATCCCGAA
GTTGCTAGTGAGATTGACGCTATTGTAGCTGGAAAATCCCCTGTAACCATTACTGAAAAAGACTTCCCTGTCTATGAGAA
TGGCTTCTCTCAAGCAACTCGTAATTCGTCCCAAGATGCTATTAATACAGCAGCAGTTTTACCAACCTTCTTAGGTGGAT
CGGCAGACTTAGCTCACTCCAACATGACCTACATCAAGGCAGATGGCTTACAAGATAAATATAATCCATTAAACCGCAAT
ATTCAGTTTGGGGTACGTGAATTTGTCATGGGAACAATCCTCAATGGAATGGCTCTTCATGGTGGTTTACGAGTTTATGG
CGGAACCTTCTTTGTTTTCTCTGACTACGTCAAAGCTGCTATTCGGCTATCAGCCATTCAGGAGTTGCCTGTAACTTATG
TCTTTACCCATGATTCAATTGCCGTTGGTGAAGATGGTCCAACTCATGAACCAGTTGAACATTTGGCAGGTTTACGCTCA
ATGCCAAACTTGACTGTTATCCGTCCAGCGGATGCCCGTGAAACTCAAGCGACTTGGCATCATGCCTTGACCAGTACCAC
CACTCCAACTGTCATTGTCTTAACCCGTCAAAACTTGGTAGTTGAAGAAGGGACAGACTTTGGTAAGGTCGCTAAAGGAG
CCTACGTCGTGTATGATACCCCGGGATTTGATACTATTATCATTGCTACAGGATCTGAGGTCAATCTAGCTATCAAAGCT
GCTAAGGAATTGGTTTTACAAGGTGGTAAAGTACGTGTGGTATCTATGCCCTCAACCGAACTATTTGATGCTCAAGATGC
TACCTACAAGGAAGACATTTTACCATCTAAGACTCGTCGTCGTGTGGCCATTGAAATGGCAGCGACCCAAAGTTGGTACA
AGTATGTTGGTTTGGATGGCGCGGTCATCGGTATTGACATCTTCGGTGCGTCTGCCCCAGCTCAGACTGTGATTGATAAT
TATGGATTTACGGTAGAGAATATCGTTGCTCAAGTTAAGTCCCTATAG

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-519)

Transketolase, C-terminal domain (Transketolase_C)

(535-648)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

99.542

100

0.995