Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   L1A13_RS02085 Genome accession   NZ_CP090889
Coordinates   391777..392373 (-) Length   198 a.a.
NCBI ID   WP_000248781.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain CH2439     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 386777..397373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A13_RS02080 (L1A13_02080) pbp1a 389621..391780 (-) 2160 WP_001040010.1 penicillin-binding protein PBP1A -
  L1A13_RS02085 (L1A13_02085) recU 391777..392373 (-) 597 WP_000248781.1 Holliday junction resolvase RecU Machinery gene
  L1A13_RS02090 (L1A13_02090) - 392439..392966 (+) 528 WP_000179549.1 DUF1273 domain-containing protein -
  L1A13_RS02095 (L1A13_02095) gpsB 393036..393365 (+) 330 WP_000146522.1 cell division regulator GpsB -
  L1A13_RS02105 (L1A13_02105) - 393851..395008 (+) 1158 WP_000711393.1 class I SAM-dependent RNA methyltransferase -
  L1A13_RS02110 (L1A13_02110) mapZ 395021..396415 (+) 1395 WP_000039274.1 mid-cell-anchored protein MapZ -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23156.61 Da        Isoelectric Point: 9.8515

>NTDB_id=557173 L1A13_RS02085 WP_000248781.1 391777..392373(-) (recU) [Streptococcus pneumoniae strain CH2439]
MVNYPHKVSPQKRQTSLSQPKNFANRGMSFEKMINATNDYYLSQGLAVIHKKPTPIQIVQVDYPQRSRAKIVEAYFRQAS
TTDYSGVYNGYYIDFEVKETKQKRAIPMKNFHPHQIQHMEQVLAQQGICFVLLHFSSQQETYLLLAFDLIRFYHQDKGQK
SMPLEYIREYGYEIKAGAFPQIPYLNVIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=557173 L1A13_RS02085 WP_000248781.1 391777..392373(-) (recU) [Streptococcus pneumoniae strain CH2439]
ATGGTCAACTATCCACATAAAGTTTCACCACAAAAAAGACAAACATCTCTTTCTCAACCCAAAAATTTCGCAAATCGAGG
AATGTCTTTTGAAAAGATGATCAATGCTACCAACGACTACTATTTGTCTCAGGGCTTGGCTGTTATACATAAGAAACCAA
CTCCTATTCAAATCGTACAAGTGGACTATCCACAACGAAGTCGTGCCAAGATTGTTGAAGCCTATTTTCGACAAGCTTCA
ACGACGGACTATTCTGGCGTTTATAATGGATATTACATCGACTTTGAAGTCAAGGAAACAAAACAAAAACGTGCGATTCC
GATGAAAAATTTTCATCCACATCAGATTCAGCATATGGAACAAGTCCTTGCCCAACAAGGAATCTGCTTTGTCCTTCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTGCTGGCATTCGATTTGATTCGCTTCTATCATCAAGATAAGGGACAAAAA
TCAATGCCACTTGAATATATTCGAGAATATGGATATGAAATCAAGGCTGGTGCCTTCCCTCAAATTCCTTATCTCAATGT
TATCAAAGAACATTTATTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48

100

0.485