Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IBG19_RS07530 Genome accession   NZ_CP072953
Coordinates   1629697..1630323 (+) Length   208 a.a.
NCBI ID   WP_022650743.1    Uniprot ID   -
Organism   Enterobacter sp. MGH 3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1624697..1635323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBG19_RS07510 - 1625096..1626856 (-) 1761 WP_022650741.1 Lon protease family protein -
  IBG19_RS07515 matP 1627043..1627495 (+) 453 WP_003858158.1 macrodomain Ter protein MatP -
  IBG19_RS07520 ompA 1627561..1628613 (-) 1053 WP_003858156.1 porin OmpA -
  IBG19_RS07525 sulA 1628970..1629479 (-) 510 WP_032610196.1 SOS-induced cell division inhibitor SulA -
  IBG19_RS07530 sxy/tfoX 1629697..1630323 (+) 627 WP_022650743.1 TfoX/Sxy family DNA transformation protein Regulator
  IBG19_RS07535 yccS 1630280..1632442 (-) 2163 WP_022650744.1 YccS family putative transporter -
  IBG19_RS07540 - 1632461..1632907 (-) 447 WP_003858149.1 YccF domain-containing protein -
  IBG19_RS07545 helD 1633030..1635084 (+) 2055 WP_022650745.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24001.63 Da        Isoelectric Point: 9.7838

>NTDB_id=557018 IBG19_RS07530 WP_022650743.1 1629697..1630323(+) (sxy/tfoX) [Enterobacter sp. MGH 3]
MKKISYKRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=557018 IBG19_RS07530 WP_022650743.1 1629697..1630323(+) (sxy/tfoX) [Enterobacter sp. MGH 3]
ATGAAAAAGATATCTTATAAGCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCTTCCTCTTTTCTGACCCTGATGAAACGAGGACGCCCAGTGCTGCTTAAT
TACTACCGTGTGGACGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCGAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.406

97.115

0.577