Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IBD60_RS16620 Genome accession   NZ_CP072949
Coordinates   3379418..3380014 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae MGH 39     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3374418..3385014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBD60_RS16605 helD 3374626..3376680 (-) 2055 WP_032431680.1 DNA helicase IV -
  IBD60_RS16610 - 3376805..3377251 (+) 447 WP_002898425.1 YccF domain-containing protein -
  IBD60_RS16615 yccS 3377269..3379404 (+) 2136 WP_002898422.1 YccS family putative transporter -
  IBD60_RS16620 sxy/tfoX 3379418..3380014 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  IBD60_RS16625 sulA 3380363..3380872 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  IBD60_RS16630 ompA 3381225..3382295 (+) 1071 WP_002898408.1 porin OmpA -
  IBD60_RS16635 matP 3382427..3382879 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  IBD60_RS16640 - 3383065..3384822 (+) 1758 WP_016529118.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=557003 IBD60_RS16620 WP_004150836.1 3379418..3380014(-) (sxy/tfoX) [Klebsiella pneumoniae MGH 39]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=557003 IBD60_RS16620 WP_004150836.1 3379418..3380014(-) (sxy/tfoX) [Klebsiella pneumoniae MGH 39]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51