Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   KAQ61_RS13070 Genome accession   NZ_CP072916
Coordinates   2765022..2765408 (-) Length   128 a.a.
NCBI ID   WP_210929452.1    Uniprot ID   -
Organism   Comamonas aquatica strain NEB418     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2760022..2770408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAQ61_RS13055 (KAQ61_13055) - 2761800..2764034 (-) 2235 WP_210929450.1 methyl-accepting chemotaxis protein -
  KAQ61_RS13060 (KAQ61_13060) - 2764059..2764601 (-) 543 WP_210929451.1 chemotaxis protein CheW -
  KAQ61_RS13065 (KAQ61_13065) - 2764613..2764984 (-) 372 WP_042415197.1 response regulator transcription factor -
  KAQ61_RS13070 (KAQ61_13070) pilG 2765022..2765408 (-) 387 WP_210929452.1 response regulator Regulator
  KAQ61_RS13075 (KAQ61_13075) - 2765468..2765620 (-) 153 WP_042415201.1 rubredoxin -
  KAQ61_RS13080 (KAQ61_13080) thiD 2765731..2766720 (+) 990 WP_210929453.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KAQ61_RS13085 (KAQ61_13085) hemL 2766704..2768008 (+) 1305 WP_042415205.1 glutamate-1-semialdehyde 2,1-aminomutase -
  KAQ61_RS13090 (KAQ61_13090) - 2768067..2768672 (-) 606 WP_210929454.1 DNA-3-methyladenine glycosylase I -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14228.38 Da        Isoelectric Point: 7.1061

>NTDB_id=556869 KAQ61_RS13070 WP_210929452.1 2765022..2765408(-) (pilG) [Comamonas aquatica strain NEB418]
MSAANASFKVLVVDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALAKVNDFQPQLIFCDILMPKLDGYQTCAIIKRNPHFS
DTPIVMLSSKDGVFDKARGRMVGCQEYLTKPFSKDQLLQAVQQFGRTA

Nucleotide


Download         Length: 387 bp        

>NTDB_id=556869 KAQ61_RS13070 WP_210929452.1 2765022..2765408(-) (pilG) [Comamonas aquatica strain NEB418]
TTGAGTGCAGCAAACGCATCGTTCAAGGTGCTGGTTGTCGATGACAGCAATACGATCCGCCGCAGTGCCGAGATCTTCCT
CAAGCAAGGGGGGCACGAGGTGCTCCTGGCCGAGGATGGCTTCGACGCGCTGGCCAAGGTCAACGACTTTCAGCCGCAGC
TGATTTTTTGCGACATCCTGATGCCCAAGCTGGATGGCTACCAGACCTGCGCCATCATCAAGCGCAACCCCCATTTTTCG
GACACGCCGATCGTGATGCTGTCTTCCAAGGACGGTGTCTTCGACAAGGCCCGCGGCAGGATGGTGGGGTGCCAGGAATA
CCTCACCAAGCCGTTCTCCAAGGATCAGTTGCTGCAGGCTGTGCAACAGTTCGGACGTACCGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

56.098

96.094

0.539