Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J9870_RS25240 Genome accession   NZ_CP072913
Coordinates   5801381..5802748 (-) Length   455 a.a.
NCBI ID   WP_003185644.1    Uniprot ID   J2YBF9
Organism   Pseudomonas sp. Tri1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5796381..5807748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9870_RS25215 - 5796428..5797120 (+) 693 WP_210641074.1 GntR family transcriptional regulator -
  J9870_RS25220 yjiA 5797267..5798235 (-) 969 WP_210645422.1 GTPase -
  J9870_RS25225 - 5798528..5798725 (-) 198 WP_003201656.1 YbdD/YjiX family protein -
  J9870_RS25230 - 5798742..5800808 (-) 2067 WP_210641076.1 carbon starvation CstA family protein -
  J9870_RS25235 - 5800966..5801322 (+) 357 WP_210641084.1 PilZ domain-containing protein -
  J9870_RS25240 radA 5801381..5802748 (-) 1368 WP_003185644.1 DNA repair protein RadA Machinery gene
  J9870_RS25245 - 5802791..5803318 (-) 528 WP_246883162.1 ankyrin repeat domain-containing protein -
  J9870_RS25250 - 5803457..5804998 (-) 1542 WP_210641086.1 catalase -
  J9870_RS25255 mscL 5805280..5805693 (+) 414 WP_072411386.1 large-conductance mechanosensitive channel protein MscL -
  J9870_RS25260 - 5805761..5806537 (-) 777 WP_210641088.1 ferredoxin--NADP reductase -
  J9870_RS25265 - 5806803..5807543 (+) 741 WP_246883053.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48800.28 Da        Isoelectric Point: 6.8987

>NTDB_id=556825 J9870_RS25240 WP_003185644.1 5801381..5802748(-) (radA) [Pseudomonas sp. Tri1]
MAKAKRMYGCTECGSTFPKWAGQCSECGAWNTLTETMVESGGAAAPTGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=556825 J9870_RS25240 WP_003185644.1 5801381..5802748(-) (radA) [Pseudomonas sp. Tri1]
ATGGCCAAGGCAAAGCGCATGTACGGCTGCACCGAGTGCGGCTCGACCTTTCCCAAATGGGCCGGCCAGTGCAGCGAATG
CGGGGCCTGGAATACCCTGACCGAAACCATGGTGGAAAGCGGCGGTGCGGCGGCGCCCACCGGTCGCACGGGCTGGGCCG
GCCAGCAGGCACAGATCAAGACCCTGGCCGAAGTCAGCGTTGAAGAAATCCCACGCTTTTCCACCGCGTCCGGTGAGCTG
GACCGCGTGTTGGGCGGCGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGCGACCCAGGCATCGGCAAATCCACCAT
CCTGCTGCAGACCTTGTGCAACCTCGCCACCCGCATGCCGGCGCTATATGTCACCGGTGAGGAATCCCAACAGCAAGTCG
CCATGCGCGCCCGACGACTGGGGCTGCCCCAGGACCAACTACGGGTCATGACCGAGACCTGCATCGAAACCATCATCGCC
ACGGCGCGCCTGGAAAAACCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACTGAACAACTGCAATCGGCGCC
GGGCGGCGTGTCTCAAGTGCGCGAAAGTGCGGCGTTGCTGGTGCGTTATGCCAAGCAGAGCGGTACGGCGATTTTCCTGG
TGGGCCACGTCACCAAGGAAGGCGCGCTGGCGGGCCCGCGGGTGCTGGAGCACATGGTCGACACCGTGTTGTATTTCGAG
GGCGAATCCGATGGGCGCCTGCGTTTGTTACGAGCCGTGAAGAACCGCTTTGGCGCCGTTAACGAGCTGGGTGTGTTCGG
CATGACTGACAGAGGCCTGAAAGAAGTCTCCAATCCTTCGGCGATTTTTCTGACGCGTGCCCAGGAAGAAGTACCGGGCA
GCGTGGTCATGGCCACCTGGGAAGGCACGCGCCCGATGCTGGTGGAAGTTCAGGCCCTGGTGGACGACAGTCACTTGGCG
AATCCGCGCCGGGTCACCTTGGGGCTGGATCAGAATCGGCTTGCCATGTTGCTGGCTGTCCTGCATCGACACGGTGGGAT
TCCGACTCACGACCAGGACGTTTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTCATGTCCAGCCTGCGCAATCGTCCGTTGCCCCATGATCTGCTGGTGTTCGGCGAAGTGGGGCTGTCGGGC
GAGGTGCGGCCGGTGCCCAGTGGCCAGGAGCGACTCAAGGAGGCGGCCAAGCATGGTTTCAAGCGCGCCATCGTGCCCAA
GGGCAACGCGCCGAAGGAAGCACCGCCGGGGTTGCAGATCATTGCCGTGACGCGCCTGGAGCAGGCGTTGGATGCGTTGT
TCGAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2YBF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464