Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   L1A16_RS08605 Genome accession   NZ_CP090885
Coordinates   1693680..1694390 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain ND6401     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1688680..1699390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A16_RS08590 (L1A16_08590) - 1689221..1689469 (-) 249 WP_000364990.1 YneF family protein -
  L1A16_RS08595 (L1A16_08595) treC 1689725..1691350 (-) 1626 WP_000171222.1 alpha,alpha-phosphotrehalase -
  L1A16_RS08600 (L1A16_08600) treP 1691528..1693495 (-) 1968 WP_000514329.1 PTS system trehalose-specific EIIBC component -
  L1A16_RS08605 (L1A16_08605) treR 1693680..1694390 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  L1A16_RS08610 (L1A16_08610) - 1694545..1695871 (+) 1327 Protein_1723 transposase -
  L1A16_RS08615 (L1A16_08615) - 1695946..1696872 (-) 927 WP_001291296.1 ATP-binding cassette domain-containing protein -
  L1A16_RS08620 (L1A16_08620) amiE 1696883..1697950 (-) 1068 WP_000159554.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  L1A16_RS08625 (L1A16_08625) amiD 1697959..1698885 (-) 927 WP_000103701.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=556757 L1A16_RS08605 WP_000760673.1 1693680..1694390(+) (treR) [Streptococcus pneumoniae strain ND6401]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=556757 L1A16_RS08605 WP_000760673.1 1693680..1694390(+) (treR) [Streptococcus pneumoniae strain ND6401]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593