Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   L1A16_RS05540 Genome accession   NZ_CP090885
Coordinates   1105154..1105618 (-) Length   154 a.a.
NCBI ID   WP_001135764.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ND6401     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1100154..1110618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A16_RS05520 (L1A16_05520) - 1101105..1102073 (-) 969 WP_000105347.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  L1A16_RS05525 (L1A16_05525) pdrM 1102227..1103588 (-) 1362 WP_000278539.1 sodium-coupled multidrug efflux MATE transporter PdrM -
  L1A16_RS05530 (L1A16_05530) - 1103599..1103859 (-) 261 WP_001105925.1 hypothetical protein -
  L1A16_RS05535 (L1A16_05535) - 1103873..1105141 (-) 1269 WP_000924466.1 dihydroorotase -
  L1A16_RS05540 (L1A16_05540) mutX 1105154..1105618 (-) 465 WP_001135764.1 8-oxo-dGTP diphosphatase Machinery gene
  L1A16_RS05545 (L1A16_05545) - 1105628..1106281 (-) 654 WP_000401326.1 uracil-DNA glycosylase -
  L1A16_RS05550 (L1A16_05550) - 1106417..1107064 (-) 648 WP_001809355.1 hypothetical protein -
  L1A16_RS05555 (L1A16_05555) - 1107078..1107791 (-) 714 WP_000499429.1 YjjG family noncanonical pyrimidine nucleotidase -
  L1A16_RS05560 (L1A16_05560) dhaM 1108250..1108630 (-) 381 WP_000443784.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  L1A16_RS10795 - 1108630..1108704 (-) 75 Protein_1111 dihydroxyacetone kinase subunit L -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17786.12 Da        Isoelectric Point: 4.2287

>NTDB_id=556730 L1A16_RS05540 WP_001135764.1 1105154..1105618(-) (mutX) [Streptococcus pneumoniae strain ND6401]
MPQLATICYIDNGKELLMLHRNKKPNDVHEGKWIGVGGKLERGETPQECAAREILEETGLKAKPVLKGVITFPEFTADLD
WYTYVFKVTEFEGDLIDCNEGTLEWVPYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=556730 L1A16_RS05540 WP_001135764.1 1105154..1105618(-) (mutX) [Streptococcus pneumoniae strain ND6401]
ATGCCTCAGTTAGCGACGATTTGCTACATTGATAATGGGAAAGAACTGCTCATGCTCCATCGTAATAAGAAACCCAATGA
TGTCCATGAAGGGAAATGGATTGGTGTGGGTGGTAAGCTAGAGAGAGGAGAGACGCCCCAGGAATGCGCGGCGCGTGAAA
TCCTTGAAGAAACAGGGCTCAAAGCCAAGCCAGTTCTAAAAGGTGTCATCACTTTTCCTGAATTTACAGCAGATTTAGAC
TGGTACACCTATGTTTTTAAGGTGACGGAGTTTGAGGGCGACTTGATTGACTGCAATGAGGGGACGCTAGAATGGGTTCC
CTATGACGAGGTTTTGAGCAAGCCGACTTGGGAAGGTGACCACACCTTTGTTGAGTGGCTTTTAGAGGATAAACCCTTCT
TTTCAGCCAAGTTTGTTTATGATGGGGATAAATTGTTGGATACCCAAGTTGATTTCTATGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

98.052

100

0.981