Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   L1A16_RS05495 Genome accession   NZ_CP090885
Coordinates   1094898..1095968 (+) Length   356 a.a.
NCBI ID   WP_000817890.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ND6401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1089898..1100968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A16_RS05480 (L1A16_05480) ylqF 1091131..1091982 (+) 852 WP_000201299.1 ribosome biogenesis GTPase YlqF -
  L1A16_RS05485 (L1A16_05485) - 1091969..1092748 (+) 780 WP_000201141.1 ribonuclease HII -
  L1A16_RS05490 (L1A16_05490) - 1092764..1094314 (+) 1551 WP_000392557.1 ClC family H(+)/Cl(-) exchange transporter -
  L1A16_RS05495 (L1A16_05495) xerS 1094898..1095968 (+) 1071 WP_000817890.1 tyrosine recombinase XerS Machinery gene
  L1A16_RS05500 (L1A16_05500) - 1096033..1097022 (-) 990 WP_000873993.1 lipoate--protein ligase -
  L1A16_RS05505 (L1A16_05505) lpdA 1097086..1098789 (-) 1704 WP_001162946.1 dihydrolipoyl dehydrogenase -
  L1A16_RS05510 (L1A16_05510) - 1098835..1099878 (-) 1044 WP_000752696.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41143.24 Da        Isoelectric Point: 9.7561

>NTDB_id=556729 L1A16_RS05495 WP_000817890.1 1094898..1095968(+) (xerS) [Streptococcus pneumoniae strain ND6401]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLKSGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVSDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=556729 L1A16_RS05495 WP_000817890.1 1094898..1095968(+) (xerS) [Streptococcus pneumoniae strain ND6401]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTACCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGA
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAGGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCTAGCACACAAGTCACTGACCTCTATACCCATATTGTTAGTGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.438

100

0.994