Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   J9538_RS03400 Genome accession   NZ_CP072891
Coordinates   734085..735764 (+) Length   559 a.a.
NCBI ID   WP_160231467.1    Uniprot ID   -
Organism   Enterococcus hirae strain F104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 729085..740764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9538_RS03370 (J9538_03370) - 729385..730230 (+) 846 WP_088775053.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  J9538_RS03375 (J9538_03375) xseA 730231..731571 (+) 1341 WP_034698802.1 exodeoxyribonuclease VII large subunit -
  J9538_RS03380 (J9538_03380) - 731577..731801 (+) 225 WP_010719792.1 exodeoxyribonuclease VII small subunit -
  J9538_RS03385 (J9538_03385) - 731801..732685 (+) 885 WP_010719791.1 polyprenyl synthetase family protein -
  J9538_RS03390 (J9538_03390) - 732700..733518 (+) 819 WP_160231468.1 TlyA family RNA methyltransferase -
  J9538_RS03395 (J9538_03395) argR 733618..734067 (+) 450 WP_010719789.1 arginine repressor -
  J9538_RS03400 (J9538_03400) recN 734085..735764 (+) 1680 WP_160231467.1 DNA repair protein RecN Machinery gene
  J9538_RS03405 (J9538_03405) - 735987..736103 (-) 117 WP_010719787.1 DUF4044 domain-containing protein -
  J9538_RS03410 (J9538_03410) - 736173..737129 (-) 957 WP_010719786.1 magnesium transporter CorA family protein -
  J9538_RS03415 (J9538_03415) - 737385..737753 (+) 369 WP_088775052.1 DUF3397 domain-containing protein -
  J9538_RS03420 (J9538_03420) mraZ 737925..738356 (+) 432 WP_205216316.1 division/cell wall cluster transcriptional repressor MraZ -
  J9538_RS03425 (J9538_03425) rsmH 738377..739336 (+) 960 WP_053766114.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  J9538_RS03430 (J9538_03430) ftsL 739341..739736 (+) 396 WP_010719782.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 62988.24 Da        Isoelectric Point: 4.5725

>NTDB_id=556667 J9538_RS03400 WP_160231467.1 734085..735764(+) (recN) [Enterococcus hirae strain F104]
MLQEISITNFAIIPELHLSFHKGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGADKCILEGLFEWPSQEGFTELM
EELGIESDGDNLIVRRDMALTGKNVCRVNGHIVTLANLRRIGSYLVDIQGQNEHQELLQPEAHLNLLDRFGDRTFQQQKK
KYQKEYAIYRELERKMRKVQQNEKSFVQRIDMLHFQQEEIAAADLQVGEEEQLSEEREKLSNYQKIVDSFASGYSALSAG
EPSSVDNVGLAVSELQSIAHLDNEYEAIVENVQSAYYLLQDAIGDMSRQIDLLELDENRLEEVNQRLELIRQLKRKYGES
VEAILDYYEEITKELDSSDFSEGQLEKMQLELTKKETLLQEQALALHKTRKKIAKELEKSILTELKSLYMENTEFEVRFS
SEKNGQLDANGLDQVEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
SQISCHSQVLCITHLPQVAAVADFQYYIQKEVIDGRTQTSVTELQPTQRETEIARMLAGSEITPLTVEHAKELLRLASK

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=556667 J9538_RS03400 WP_160231467.1 734085..735764(+) (recN) [Enterococcus hirae strain F104]
TTGTTACAAGAGATCAGTATTACTAATTTTGCGATTATTCCGGAATTGCATTTGTCTTTCCATAAAGGAATGACAGCTCT
AACTGGCGAGACCGGGGCAGGTAAATCGATTATCATTGATGCCCTTGGATTACTGGCTGGTGGTAGAGGCTCCAGTGATT
ATATTCGCCAAGGAGCCGATAAGTGTATCTTAGAAGGGTTGTTTGAATGGCCAAGTCAAGAAGGATTTACTGAATTGATG
GAAGAACTTGGCATCGAATCAGATGGTGATAACTTGATTGTTCGTCGTGATATGGCATTAACGGGTAAAAATGTCTGCCG
AGTCAATGGACATATTGTTACGCTGGCAAACCTTAGAAGGATCGGAAGTTATCTAGTTGATATTCAAGGACAAAATGAAC
ACCAGGAGCTATTACAACCAGAAGCCCATTTAAATTTATTGGATCGTTTTGGTGATCGTACTTTTCAACAACAAAAGAAA
AAATATCAAAAAGAGTATGCTATCTATCGTGAGCTCGAACGAAAAATGCGGAAAGTCCAACAAAATGAAAAATCATTTGT
TCAACGGATCGACATGCTTCATTTTCAACAAGAAGAAATCGCAGCAGCTGATTTACAAGTTGGCGAAGAGGAACAGTTAA
GCGAGGAAAGAGAAAAATTAAGCAATTATCAAAAGATAGTGGATAGTTTTGCTAGTGGTTATAGTGCATTGAGTGCGGGA
GAACCCAGTAGTGTGGATAACGTTGGTTTAGCTGTTTCTGAACTACAAAGCATTGCTCATCTAGATAATGAATATGAAGC
AATCGTTGAGAATGTTCAAAGTGCTTATTATTTACTTCAAGATGCCATTGGTGACATGAGTCGTCAAATCGATCTGCTGG
AATTGGATGAAAACCGATTAGAAGAAGTCAATCAACGGCTTGAATTGATTCGTCAGTTGAAACGCAAATATGGGGAGTCA
GTGGAAGCAATCCTTGATTATTACGAAGAAATCACTAAAGAACTGGATTCTTCTGATTTCTCAGAAGGTCAACTAGAAAA
AATGCAACTGGAATTAACTAAAAAAGAAACGTTATTGCAAGAACAAGCATTAGCACTGCATAAAACAAGAAAAAAAATCG
CTAAAGAACTAGAAAAATCAATCTTAACGGAATTAAAAAGTCTATATATGGAAAACACGGAGTTTGAAGTCCGTTTTTCA
TCTGAAAAAAATGGACAATTAGATGCTAATGGATTGGACCAAGTGGAATTTTACATAACCACAAATCCTGGAGAACCATT
GAAGCCATTAGTAAAAGTTGCCTCAGGTGGGGAACTATCACGTATGTTGTTGGCGTTAAAAACTATTTTTTCTTCAGAAC
AAGGTGTGACTAGTATCATTTTTGATGAAGTGGATACAGGAGTAAGCGGTCGAGTTGCCCAAGCGATTGCAGATAAGATC
TCACAGATCTCATGTCACTCACAAGTTTTGTGTATCACCCATCTACCGCAAGTCGCTGCAGTTGCCGATTTTCAATACTA
TATTCAAAAAGAAGTCATTGATGGGCGTACCCAAACATCGGTTACCGAACTACAACCCACACAACGAGAAACAGAAATTG
CCCGAATGTTAGCTGGAAGTGAAATTACCCCACTAACAGTCGAGCATGCCAAAGAATTATTACGCTTAGCAAGTAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.476

100

0.506