Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   J9537_RS10335 Genome accession   NZ_CP072888
Coordinates   2117846..2119516 (-) Length   556 a.a.
NCBI ID   WP_218256108.1    Uniprot ID   -
Organism   Enterococcus raffinosus strain F162_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2112846..2124516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9537_RS10305 (J9537_10305) - 2112962..2115151 (-) 2190 WP_218256104.1 penicillin-binding transpeptidase domain-containing protein -
  J9537_RS10310 (J9537_10310) ftsL 2115152..2115529 (-) 378 WP_010745915.1 cell division protein FtsL -
  J9537_RS10315 (J9537_10315) rsmH 2115535..2116488 (-) 954 WP_010745914.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  J9537_RS10320 (J9537_10320) mraZ 2116504..2116935 (-) 432 WP_218256106.1 division/cell wall cluster transcriptional repressor MraZ -
  J9537_RS10325 (J9537_10325) - 2117104..2117475 (-) 372 WP_010745912.1 DUF3397 domain-containing protein -
  J9537_RS10330 (J9537_10330) - 2117703..2117819 (+) 117 WP_010745911.1 DUF4044 domain-containing protein -
  J9537_RS10335 (J9537_10335) recN 2117846..2119516 (-) 1671 WP_218256108.1 DNA repair protein RecN Machinery gene
  J9537_RS10340 (J9537_10340) - 2119545..2120003 (-) 459 WP_010745909.1 arginine repressor -
  J9537_RS10345 (J9537_10345) - 2120019..2120834 (-) 816 WP_010745908.1 TlyA family RNA methyltransferase -
  J9537_RS10350 (J9537_10350) - 2120879..2121763 (-) 885 WP_218256109.1 polyprenyl synthetase family protein -
  J9537_RS10355 (J9537_10355) - 2121763..2121984 (-) 222 WP_010745906.1 exodeoxyribonuclease VII small subunit -
  J9537_RS10360 (J9537_10360) xseA 2121984..2123318 (-) 1335 WP_010745905.1 exodeoxyribonuclease VII large subunit -
  J9537_RS10365 (J9537_10365) - 2123334..2124191 (-) 858 WP_218256111.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62830.20 Da        Isoelectric Point: 4.5520

>NTDB_id=556648 J9537_RS10335 WP_218256108.1 2117846..2119516(-) (recN) [Enterococcus raffinosus strain F162_2]
MLQELTIKNFAIISSLHLGFTDGMTALTGETGAGKSIIIDAVSLLAGARSSIEYIRQGSDKCLVEGLFDLPKQHEFSLLM
EELGIEVDEAGLIVQRDLNISGKSVSRVNGRIVTLANLRRIGQFLVDIQGQNDHQELMHPESHLRLLDSFGDSAFQEKKI
RYQTAYHSYITLMNQVRKFKQNEQSFVQRIDMLTFQQEEIGNAELSIGEEEKLMEEREKLTNYQKIVDSLSYSYQAMTNE
ETNSLDAIGSASQELQTIASLDTDYEGISDNVHSAYYLLQDAVSEIGRQLDLLELDEERLDIVNERLELIHQLKRKYGDS
IEIILNYYDQISEELLDSDFSGDKLERLEKELYEKENELQHLAEMLQAARKKMAKKLESAIQNELKDLYMENARFEVSFK
ESSFNAEGVDEVEFYITTNPGEPLKPLVKVASGGEISRVMLALKTIFSKTQGLTSIVFDEVDTGVSGRVAQAIADKIYQI
GLNSQALCITHLPQVAAKADHQLFIRKEIVDGRTLTKVEELTERDRIDEIARMLAGAEITDLTVKHAKELLQLAKK

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=556648 J9537_RS10335 WP_218256108.1 2117846..2119516(-) (recN) [Enterococcus raffinosus strain F162_2]
ATGTTGCAAGAGCTAACAATCAAAAATTTTGCGATCATTTCTTCGTTGCATTTAGGATTTACTGATGGAATGACAGCTCT
AACTGGCGAAACAGGCGCTGGAAAATCAATTATTATTGACGCAGTTAGCTTGTTAGCTGGAGCTCGTTCATCCATCGAAT
ATATTCGTCAAGGTAGTGATAAATGTTTAGTTGAGGGGCTTTTTGATTTACCTAAGCAACATGAGTTCAGTCTACTAATG
GAAGAACTTGGAATTGAAGTAGATGAGGCAGGATTGATTGTTCAAAGAGATTTGAATATCTCAGGAAAAAGTGTCTCACG
AGTGAACGGAAGAATTGTTACTTTGGCGAACTTACGAAGAATTGGTCAATTCTTAGTAGACATTCAAGGCCAAAACGACC
ACCAGGAATTGATGCATCCAGAATCGCATCTCCGTCTTTTAGATAGTTTTGGTGACTCGGCTTTTCAAGAGAAAAAAATT
AGGTATCAGACCGCATATCATAGCTATATAACTTTAATGAATCAAGTTAGAAAATTTAAACAAAATGAACAATCTTTTGT
TCAAAGAATAGATATGCTAACTTTTCAACAAGAAGAAATTGGAAATGCAGAGCTATCTATTGGTGAAGAAGAAAAACTGA
TGGAAGAGCGGGAGAAACTTACGAACTATCAGAAAATAGTAGATAGTCTTTCTTATAGTTACCAAGCTATGACAAATGAA
GAAACAAACTCTTTAGATGCGATAGGTTCAGCTAGTCAGGAACTTCAAACAATAGCTTCTTTAGATACTGACTATGAAGG
CATATCTGATAATGTTCATAGTGCCTACTATCTTTTGCAAGATGCGGTCAGTGAAATCGGGCGTCAATTAGATTTGCTAG
AGTTAGATGAGGAGCGCTTGGATATAGTTAATGAAAGGCTTGAACTAATTCATCAACTGAAAAGAAAGTATGGAGATTCG
ATCGAGATCATTCTAAACTATTATGATCAGATTAGTGAAGAACTTTTGGATTCAGATTTCTCTGGAGACAAATTGGAAAG
ATTAGAAAAAGAACTATATGAAAAAGAAAATGAATTACAACACTTAGCTGAGATGCTACAAGCGGCGCGAAAAAAGATGG
CGAAAAAATTAGAATCAGCAATCCAAAATGAACTGAAGGATTTGTACATGGAGAATGCTCGGTTTGAAGTGAGTTTTAAA
GAGAGCTCTTTTAATGCAGAGGGAGTAGATGAGGTAGAGTTTTACATAACGACTAATCCTGGAGAGCCATTGAAGCCTCT
AGTTAAAGTGGCATCAGGAGGAGAAATTTCTCGAGTCATGTTGGCTTTAAAGACCATTTTCTCAAAAACTCAGGGATTAA
CGAGTATTGTTTTTGATGAAGTAGATACTGGAGTGAGTGGGCGAGTCGCCCAAGCGATTGCAGACAAGATTTATCAAATT
GGTCTGAATTCACAGGCCTTATGTATCACTCATTTACCTCAAGTAGCCGCTAAAGCTGATCATCAACTATTTATTCGTAA
AGAGATAGTTGATGGAAGGACTTTAACTAAGGTAGAGGAGTTAACTGAAAGGGATCGTATTGACGAAATTGCTCGTATGT
TAGCAGGAGCAGAGATTACAGATTTAACTGTCAAGCATGCAAAAGAATTATTGCAATTAGCAAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.596

100

0.498