Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   J9537_RS05060 Genome accession   NZ_CP072888
Coordinates   1034613..1036430 (+) Length   605 a.a.
NCBI ID   WP_218256959.1    Uniprot ID   -
Organism   Enterococcus raffinosus strain F162_2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1029613..1041430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9537_RS05035 (J9537_05035) - 1029938..1030657 (-) 720 WP_218256956.1 HAD family hydrolase -
  J9537_RS05040 (J9537_05040) spxA 1031438..1031836 (+) 399 WP_010739854.1 transcriptional regulator SpxA -
  J9537_RS05045 (J9537_05045) - 1031868..1032473 (-) 606 WP_218256957.1 HAD family phosphatase -
  J9537_RS05050 (J9537_05050) - 1032698..1033342 (+) 645 WP_010746501.1 adaptor protein MecA -
  J9537_RS05055 (J9537_05055) - 1033481..1034479 (+) 999 WP_218256958.1 competence protein CoiA family protein -
  J9537_RS05060 (J9537_05060) pepF 1034613..1036430 (+) 1818 WP_218256959.1 oligoendopeptidase F Regulator
  J9537_RS05065 (J9537_05065) - 1036746..1037924 (+) 1179 WP_218256960.1 class C sortase -
  J9537_RS05070 (J9537_05070) - 1037926..1039104 (+) 1179 WP_218256961.1 class C sortase -
  J9537_RS05075 (J9537_05075) - 1039139..1039783 (-) 645 WP_010746496.1 DsbA family protein -
  J9537_RS05080 (J9537_05080) - 1039780..1040388 (-) 609 WP_218256962.1 CYTH domain-containing protein -
  J9537_RS05085 (J9537_05085) - 1040594..1041259 (+) 666 WP_010746494.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69207.74 Da        Isoelectric Point: 4.6143

>NTDB_id=556634 J9537_RS05060 WP_218256959.1 1034613..1036430(+) (pepF) [Enterococcus raffinosus strain F162_2]
MSEAKQLPKRQEVPTELTWDLTKIFTDDAAFETKFQALSDELTEVDKIKGSLGKGAAEFLAAIEYVLDIYRKAEVIYVYA
HLKNDEDTANTTNQALYARASSLIAQVSEAVSWFEPEMLELSDQEIWSFFEAEPKLELYRHFVEQIISERAHVLPAEQEA
LLAGASEIFSSSADTFSVMNNADLKFPVVQNEAGEDVQLTHGVYGQLLESTDRKVREQAFKALYSVYHQFRNTFASTLST
HIKGHNYKAKIRGYASARAAALSGNHIPEDVYETLTLVVNQYLPLLHRYVELRKELLGLDELHMYDLYTPLLAEAPVKFT
YEEAQAKALEALKPLGEEYLEVVKKAFDERWIDVVENQGKRSGAYSSGAYDTQPYILLNWHDRLDELYTLVHEMGHSVHS
YFTRHTQPYVYGDYSIFLAEIASTTNENLLTSYLLETEKDPKVRAYIINHFLDGFKGTIFRQTQFAEFEHFIHTEDAAGN
PLTSEHLSKFYGELNAKYYGPIVVNDEEIKDEWSRIPHFYYNYYVYQYATGFSAASALAKRIVEGEPDALEKYLAYLKSG
SSDYPIEVMKKAGVDMTQPTYIEDAMEIFALRLDELEQIVQELKA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=556634 J9537_RS05060 WP_218256959.1 1034613..1036430(+) (pepF) [Enterococcus raffinosus strain F162_2]
ATGAGTGAAGCAAAACAATTGCCAAAACGGCAGGAAGTACCCACTGAACTGACTTGGGACTTAACTAAAATTTTTACAGA
TGACGCCGCCTTTGAAACAAAATTCCAGGCCTTATCTGATGAACTGACTGAAGTGGATAAGATCAAAGGGAGTTTAGGAA
AAGGTGCGGCCGAATTTTTAGCGGCGATCGAATACGTCCTAGATATTTATCGCAAGGCGGAAGTCATTTACGTATATGCC
CATTTAAAAAATGATGAAGATACCGCCAATACGACGAACCAAGCATTGTATGCGCGCGCTTCTAGCTTAATTGCACAAGT
GAGTGAAGCGGTTAGCTGGTTTGAGCCAGAAATGCTGGAGCTTTCTGATCAAGAAATTTGGTCATTTTTTGAAGCAGAGC
CCAAATTAGAATTATATCGTCATTTTGTTGAGCAGATCATTTCAGAGCGAGCGCATGTCTTGCCGGCTGAACAGGAAGCC
TTATTAGCAGGAGCCAGTGAAATTTTCAGCAGCTCAGCAGATACTTTTTCTGTCATGAACAACGCCGATCTTAAATTTCC
GGTGGTACAAAATGAAGCAGGCGAAGACGTTCAATTAACACACGGTGTTTATGGTCAGTTATTGGAAAGCACGGATCGAA
AGGTGAGAGAACAAGCCTTCAAGGCGCTGTACTCGGTGTACCATCAATTCCGTAATACCTTTGCTTCAACCTTAAGCACG
CACATTAAAGGCCATAATTACAAGGCGAAGATTCGCGGATATGCCTCTGCGCGTGCGGCAGCACTTAGCGGAAATCATAT
CCCGGAAGATGTGTATGAAACATTGACGCTAGTAGTCAATCAATATTTACCTCTATTGCATCGTTATGTGGAATTACGGA
AAGAGCTGCTCGGTTTAGATGAACTGCACATGTATGATTTGTACACACCGCTTTTAGCAGAAGCGCCAGTGAAGTTCACT
TACGAAGAAGCGCAGGCCAAAGCGTTAGAAGCATTGAAACCGCTAGGTGAGGAATACTTAGAAGTCGTTAAAAAGGCCTT
CGATGAACGTTGGATCGATGTTGTGGAAAATCAAGGGAAGCGCAGCGGGGCCTACTCTTCTGGTGCCTATGACACACAGC
CATATATTTTATTAAACTGGCATGATCGTCTGGATGAATTGTATACATTGGTACATGAGATGGGTCATAGTGTTCATAGC
TATTTCACACGACACACACAACCCTATGTTTACGGTGATTACTCCATCTTCTTAGCAGAAATTGCTTCAACAACCAATGA
GAATCTTTTGACCAGCTATCTATTGGAAACAGAAAAAGATCCAAAGGTTCGGGCCTATATCATTAATCATTTCTTAGATG
GCTTTAAGGGAACGATTTTCCGTCAGACGCAATTTGCGGAGTTTGAGCACTTTATTCATACAGAAGATGCCGCAGGAAAT
CCATTAACTAGCGAACACCTAAGCAAGTTTTACGGTGAACTAAACGCGAAGTATTATGGACCAATCGTAGTGAATGACGA
AGAAATCAAGGATGAATGGTCAAGAATTCCGCATTTCTACTATAATTACTATGTTTACCAATATGCGACTGGTTTTTCTG
CAGCCAGTGCCTTAGCGAAACGAATCGTGGAAGGCGAACCAGATGCATTGGAAAAATATTTGGCTTACTTAAAATCCGGC
AGCAGTGACTACCCAATCGAGGTCATGAAGAAGGCAGGGGTAGACATGACTCAGCCAACCTATATCGAAGATGCGATGGA
AATTTTTGCGTTACGATTAGATGAGCTGGAACAAATTGTCCAAGAATTAAAAGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.882

98.182

0.539