Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   J9537_RS03850 Genome accession   NZ_CP072888
Coordinates   776810..777532 (-) Length   240 a.a.
NCBI ID   WP_028020175.1    Uniprot ID   A0AAP5NEV2
Organism   Enterococcus raffinosus strain F162_2     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 771810..782532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9537_RS03820 (J9537_03820) - 772111..772671 (+) 561 WP_010746702.1 hypothetical protein -
  J9537_RS03825 (J9537_03825) - 772790..773227 (+) 438 WP_010746701.1 DUF948 domain-containing protein -
  J9537_RS03830 (J9537_03830) - 773230..773796 (+) 567 WP_218256780.1 YtxH domain-containing protein -
  J9537_RS03835 (J9537_03835) - 773908..774396 (+) 489 WP_218256781.1 helix-turn-helix transcriptional regulator -
  J9537_RS03840 (J9537_03840) - 774465..775565 (-) 1101 WP_218256782.1 Xaa-Pro peptidase family protein -
  J9537_RS03845 (J9537_03845) ccpA 775759..776763 (+) 1005 WP_010746697.1 catabolite control protein A -
  J9537_RS03850 (J9537_03850) treR 776810..777532 (-) 723 WP_028020175.1 trehalose operon repressor Regulator
  J9537_RS03855 (J9537_03855) treP 777908..779854 (+) 1947 WP_218256783.1 PTS system trehalose-specific EIIBC component -
  J9537_RS03860 (J9537_03860) treC 779870..781492 (+) 1623 WP_218256784.1 alpha,alpha-phosphotrehalase -
  J9537_RS03865 (J9537_03865) - 781526..782032 (-) 507 WP_010746693.1 QueT transporter family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27790.74 Da        Isoelectric Point: 8.0018

>NTDB_id=556630 J9537_RS03850 WP_028020175.1 776810..777532(-) (treR) [Enterococcus raffinosus strain F162_2]
MKNYEVIYQAIERGILKGVYEAGSYLPSENKLRQTYHVSRDTIRKALSLLMANGYIQKIQGKGSLVLKREQLRFPVSGLT
SYKELQNSYGYDSSTDVISLKKVMINEKEARVTGFEIGAVCWELIRTRAIDQKKVILDKDLLLTTVVPELDTEIAKDSIY
RYFENQLGLNIAFAEKEITIDALTDEDRELLDLNQHDINIVSVKSRVFTSDARQFQYTESRHQVDKFRFFDFARRHPSTM

Nucleotide


Download         Length: 723 bp        

>NTDB_id=556630 J9537_RS03850 WP_028020175.1 776810..777532(-) (treR) [Enterococcus raffinosus strain F162_2]
ATGAAAAATTATGAGGTGATTTACCAAGCAATCGAACGAGGAATTTTAAAAGGCGTTTATGAAGCGGGTTCTTATTTGCC
TAGTGAAAACAAATTGCGTCAAACCTACCATGTATCACGCGATACGATTCGCAAAGCCTTGTCTCTTCTGATGGCTAATG
GCTATATTCAAAAAATTCAAGGTAAAGGTTCACTTGTTTTGAAGCGAGAGCAGCTGCGATTTCCTGTTTCTGGTTTAACG
AGTTACAAGGAACTCCAAAATTCTTATGGCTATGACAGTAGTACGGACGTTATTAGTTTAAAGAAAGTTATGATTAATGA
AAAGGAAGCACGTGTCACTGGATTTGAAATCGGGGCTGTCTGCTGGGAATTGATTCGTACACGAGCGATCGACCAGAAAA
AAGTAATACTTGATAAAGACCTATTACTGACGACAGTTGTGCCTGAACTAGATACTGAAATCGCAAAGGATTCCATTTAT
CGCTACTTTGAAAATCAATTGGGGTTGAATATCGCTTTTGCTGAAAAGGAAATCACGATTGATGCCCTGACTGATGAAGA
TCGAGAACTATTGGATCTTAATCAGCACGATATCAATATTGTTTCAGTAAAAAGTCGAGTATTTACTAGTGATGCTCGGC
AATTTCAATACACAGAAAGTCGTCACCAGGTGGATAAATTCCGCTTTTTCGATTTTGCACGACGACACCCTTCAACAATG
TAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(89-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

50.847

98.333

0.5