Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   J9537_RS00525 Genome accession   NZ_CP072888
Coordinates   104483..105430 (-) Length   315 a.a.
NCBI ID   WP_245001265.1    Uniprot ID   -
Organism   Enterococcus raffinosus strain F162_2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99483..110430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9537_RS00500 (J9537_00500) - 99641..101215 (+) 1575 WP_245001264.1 hypothetical protein -
  J9537_RS00505 (J9537_00505) arr 101281..101691 (+) 411 WP_218256324.1 NAD(+)--rifampin ADP-ribosyltransferase -
  J9537_RS00510 (J9537_00510) - 101729..102697 (-) 969 WP_218256325.1 siderophore ABC transporter substrate-binding protein -
  J9537_RS00515 (J9537_00515) - 102763..103521 (-) 759 WP_218256326.1 ATP-binding cassette domain-containing protein -
  J9537_RS00520 (J9537_00520) - 103518..104486 (-) 969 WP_218256327.1 iron chelate uptake ABC transporter family permease subunit -
  J9537_RS00525 (J9537_00525) ceuB 104483..105430 (-) 948 WP_245001265.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  J9537_RS00530 (J9537_00530) - 105698..105898 (-) 201 WP_010747315.1 DUF4177 domain-containing protein -
  J9537_RS00535 (J9537_00535) - 106034..106399 (-) 366 WP_218256329.1 MerR family transcriptional regulator -
  J9537_RS00540 (J9537_00540) - 106499..106876 (+) 378 WP_218256330.1 carboxymuconolactone decarboxylase family protein -
  J9537_RS00545 (J9537_00545) - 106984..107751 (+) 768 WP_010747312.1 SDR family NAD(P)-dependent oxidoreductase -
  J9537_RS00550 (J9537_00550) - 107901..109445 (+) 1545 WP_218256331.1 zinc-ribbon domain-containing protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34301.39 Da        Isoelectric Point: 10.1435

>NTDB_id=556618 J9537_RS00525 WP_245001265.1 104483..105430(-) (ceuB) [Enterococcus raffinosus strain F162_2]
MKRKGIILGLLLLSALSLFIGVKELMLQGLLRGDSEQWLILATTRVPRTVSLLLAGATMSICGLIMQHLTQNKFVSPTTA
GTMDSARLGILLVMLFLPNASTSVRTLAAFVFAFLGTLIFLGLSRLLPNKDPIFLPLLGVMFGNIVGSVATFFAYQFQLI
QNMSSWLQGNFSLVAKGSYELLYLTIPLFFIIYLFAYSFTIVGLGEDVAVNLGVNYRLMQMLGIGLVAAASGLVLIMVGT
VPFLGVIVPNIVSLIYGDHVKQNLWITALSGSLFLMACDIISRIVIAPYEVPVSLTVGILGSLIFIYLLVRRRRA

Nucleotide


Download         Length: 948 bp        

>NTDB_id=556618 J9537_RS00525 WP_245001265.1 104483..105430(-) (ceuB) [Enterococcus raffinosus strain F162_2]
TTGAAAAGAAAAGGAATTATACTTGGTCTACTTTTGTTAAGCGCTCTCTCTTTATTTATCGGAGTCAAAGAGTTGATGCT
GCAGGGGTTGCTTCGAGGCGATTCTGAGCAATGGCTGATCCTAGCCACTACGCGTGTTCCGCGAACCGTCAGCTTGCTTT
TAGCCGGCGCGACAATGAGTATTTGCGGTCTGATTATGCAGCATCTCACACAAAATAAATTTGTTTCACCAACAACAGCG
GGCACGATGGATAGTGCTCGATTGGGGATTTTACTGGTAATGCTTTTTCTGCCAAATGCCTCTACCAGTGTTCGAACGCT
TGCCGCCTTTGTTTTTGCTTTTCTCGGAACCTTAATCTTTTTAGGACTAAGCCGGCTGCTTCCAAATAAAGATCCAATAT
TTTTGCCTTTGCTGGGTGTGATGTTCGGCAATATCGTTGGTTCTGTCGCGACCTTTTTTGCTTATCAGTTTCAACTGATC
CAAAATATGTCCTCCTGGCTGCAGGGAAACTTTTCGTTAGTCGCCAAAGGCAGCTATGAGCTGCTCTATCTGACGATTCC
TTTATTTTTCATCATTTATCTATTTGCCTATTCCTTCACAATTGTTGGCTTAGGGGAAGATGTGGCGGTGAATTTAGGTG
TCAATTATCGGTTGATGCAAATGCTTGGGATCGGTTTGGTCGCTGCCGCCAGTGGATTGGTATTGATCATGGTAGGGACA
GTGCCTTTTTTAGGCGTGATCGTTCCAAATATCGTTTCCCTGATCTATGGGGATCATGTAAAGCAAAATCTATGGATTAC
CGCGTTGAGCGGCAGTCTGTTTTTAATGGCCTGCGATATTATTTCCCGCATCGTCATCGCCCCCTATGAAGTGCCTGTCA
GTCTAACGGTAGGGATTTTAGGTAGTCTGATATTTATTTATCTATTGGTTAGGAGGAGACGTGCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.316

96.508

0.495