Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   L1A15_RS00570 Genome accession   NZ_CP090884
Coordinates   98594..99364 (+) Length   256 a.a.
NCBI ID   WP_000616162.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain MD5403     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 93594..104364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A15_RS00550 (L1A15_00550) - 95334..95771 (+) 438 WP_000076479.1 CoA-binding protein -
  L1A15_RS00555 (L1A15_00555) - 95812..96240 (+) 429 WP_000693133.1 hypothetical protein -
  L1A15_RS00560 (L1A15_00560) - 96269..97279 (-) 1011 WP_000009171.1 YeiH family protein -
  L1A15_RS00565 (L1A15_00565) - 97428..98597 (+) 1170 WP_000366345.1 pyridoxal phosphate-dependent aminotransferase -
  L1A15_RS00570 (L1A15_00570) recO 98594..99364 (+) 771 WP_000616162.1 DNA repair protein RecO Machinery gene
  L1A15_RS00575 (L1A15_00575) plsX 99361..100353 (+) 993 WP_000717457.1 phosphate acyltransferase PlsX -
  L1A15_RS00580 (L1A15_00580) - 100359..100592 (+) 234 WP_000659556.1 acyl carrier protein -
  L1A15_RS00585 (L1A15_00585) - 100638..100929 (+) 292 Protein_95 IS5/IS1182 family transposase -
  L1A15_RS00590 (L1A15_00590) blpU 101132..101362 (+) 231 Protein_96 bacteriocin-like peptide BlpU -
  L1A15_RS10355 - 101365..101490 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  L1A15_RS00595 (L1A15_00595) comA 102077..104230 (+) 2154 WP_000668304.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29788.29 Da        Isoelectric Point: 5.3615

>NTDB_id=556580 L1A15_RS00570 WP_000616162.1 98594..99364(+) (recO) [Streptococcus pneumoniae strain MD5403]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=556580 L1A15_RS00570 WP_000616162.1 98594..99364(+) (recO) [Streptococcus pneumoniae strain MD5403]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGTCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.609

100

0.996