Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   L1A14_RS08685 Genome accession   NZ_CP090883
Coordinates   1691577..1692536 (+) Length   319 a.a.
NCBI ID   WP_000777248.1    Uniprot ID   A0A0H2ZMI3
Organism   Streptococcus pneumoniae strain LE4448     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1686577..1697536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A14_RS08655 (L1A14_08655) - 1686778..1687542 (-) 765 WP_000082878.1 nuclear transport factor 2 family protein -
  L1A14_RS08660 (L1A14_08660) - 1687546..1687989 (-) 444 WP_000655202.1 MarR family transcriptional regulator -
  L1A14_RS08665 (L1A14_08665) - 1688671..1688967 (-) 297 WP_000840137.1 bacteriocin immunity protein -
  L1A14_RS08670 (L1A14_08670) pepA 1688989..1690053 (-) 1065 WP_000209199.1 glutamyl aminopeptidase -
  L1A14_RS08675 (L1A14_08675) galE 1690453..1691154 (+) 702 WP_000167838.1 UDP-glucose 4-epimerase GalE -
  L1A14_RS08680 (L1A14_08680) - 1691170..1691280 (+) 111 WP_001108391.1 hypothetical protein -
  L1A14_RS08685 (L1A14_08685) ceuB 1691577..1692536 (+) 960 WP_000777248.1 ABC transporter permease Machinery gene
  L1A14_RS08690 (L1A14_08690) - 1692526..1693482 (+) 957 WP_001193669.1 iron chelate uptake ABC transporter family permease subunit -
  L1A14_RS08695 (L1A14_08695) - 1693479..1694231 (+) 753 WP_000764312.1 ATP-binding cassette domain-containing protein -
  L1A14_RS08700 (L1A14_08700) - 1694327..1695292 (+) 966 WP_000858267.1 siderophore ABC transporter substrate-binding protein -
  L1A14_RS08705 (L1A14_08705) yidD 1695517..1695759 (-) 243 WP_000821640.1 membrane protein insertion efficiency factor YidD -
  L1A14_RS08710 (L1A14_08710) - 1695759..1696481 (-) 723 WP_001222228.1 pseudouridine synthase -
  L1A14_RS08715 (L1A14_08715) scpB 1696468..1697037 (-) 570 WP_000105310.1 SMC-Scp complex subunit ScpB -

Sequence


Protein


Download         Length: 319 a.a.        Molecular weight: 35418.29 Da        Isoelectric Point: 9.7465

>NTDB_id=556527 L1A14_RS08685 WP_000777248.1 1691577..1692536(+) (ceuB) [Streptococcus pneumoniae strain LE4448]
MKLSHYLIGLLLLLVFLSISIGTSDFSWGKLFDFDQQTWLLFQESRLPRTISILLTASSMSMAGLLMQTITQNQFAAPST
VGTTEAAKLGMVLSLFVFPSASLTQKMLFAFVSSIVFTLFFLAFMTIFTVKERWMLPLIGIIYSGIIGSVTEVIAYRFNL
VQSMTAWTQGSFSMIQTHQYEWLFLGLIILITVWKLSQTFTIMNLGKETSESLGISYSLLEKLALFLVALTTSVTMITVG
GLPFLGVIVPNLVRKRYGDNLSQTKLMVALVGANLVLACDILSRVLIRPYELSVSLLLGIIGSLVFILLLWRGGRKDAD

Nucleotide


Download         Length: 960 bp        

>NTDB_id=556527 L1A14_RS08685 WP_000777248.1 1691577..1692536(+) (ceuB) [Streptococcus pneumoniae strain LE4448]
ATGAAACTTTCTCATTATTTAATTGGCTTACTTCTACTCCTAGTCTTTCTCTCTATTAGCATTGGGACCAGTGATTTTTC
ATGGGGAAAGCTATTTGATTTCGACCAGCAGACCTGGCTCCTCTTTCAAGAGTCCCGTCTCCCAAGAACTATCAGTATTC
TCCTGACTGCCTCTAGTATGAGTATGGCAGGCCTTCTCATGCAGACTATTACCCAAAATCAGTTTGCTGCACCGAGTACA
GTTGGAACGACTGAAGCCGCCAAACTGGGAATGGTGCTGAGCCTTTTTGTCTTTCCATCGGCTAGTCTGACCCAAAAGAT
GCTCTTCGCTTTTGTTTCATCCATCGTATTCACCCTCTTCTTCCTAGCCTTTATGACCATTTTTACTGTAAAGGAAAGGT
GGATGTTGCCTCTGATTGGGATCATCTATAGCGGGATTATCGGCTCAGTCACAGAAGTTATCGCCTATCGTTTCAATCTG
GTTCAGAGTATGACTGCCTGGACCCAGGGCTCCTTCTCCATGATTCAGACCCATCAGTATGAGTGGCTCTTCTTAGGCCT
CATCATCCTGATAACCGTTTGGAAATTATCCCAAACCTTCACCATCATGAATCTAGGGAAAGAAACCAGCGAGAGTTTGG
GGATTTCCTACTCCCTACTTGAAAAACTGGCCCTCTTTCTGGTGGCGCTAACGACAAGCGTCACCATGATTACCGTGGGG
GGCCTACCATTTCTCGGAGTTATCGTTCCCAATCTTGTTCGCAAGCGCTATGGAGATAATCTAAGTCAAACCAAACTCAT
GGTCGCACTGGTTGGTGCCAATCTAGTTCTGGCTTGCGATATCCTATCCCGAGTTCTGATTAGGCCCTATGAGTTGTCTG
TCAGTCTCTTGCTAGGAATCATCGGTAGTCTCGTCTTTATCCTACTTCTCTGGAGAGGGGGACGAAAAGATGCAGACTAA

Domains


Predicted by InterProScan.

(10-312)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0H2ZMI3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.419

97.179

0.364