Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MYSTI_RS06355 Genome accession   NC_020126
Coordinates   1588230..1589591 (-) Length   453 a.a.
NCBI ID   WP_015346889.1    Uniprot ID   L7U1F6
Organism   Myxococcus stipitatus DSM 14675     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1583230..1594591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYSTI_RS06325 (MYSTI_01272) - 1584171..1584782 (-) 612 WP_015346883.1 CGNR zinc finger domain-containing protein -
  MYSTI_RS06330 (MYSTI_01273) trhA 1584911..1585588 (-) 678 WP_015346884.1 PAQR family membrane homeostasis protein TrhA -
  MYSTI_RS06335 (MYSTI_01274) - 1585896..1586594 (+) 699 WP_015346885.1 STAS domain-containing protein -
  MYSTI_RS06340 (MYSTI_01275) - 1586622..1587218 (+) 597 WP_015346886.1 hypothetical protein -
  MYSTI_RS06345 (MYSTI_01276) - 1587282..1587692 (-) 411 WP_015346887.1 DoxX family protein -
  MYSTI_RS06350 (MYSTI_01277) - 1587803..1588225 (+) 423 WP_015346888.1 winged helix-turn-helix transcriptional regulator -
  MYSTI_RS06355 (MYSTI_01278) radA 1588230..1589591 (-) 1362 WP_015346889.1 DNA repair protein RadA Machinery gene
  MYSTI_RS06360 (MYSTI_01279) bioB 1589813..1590847 (+) 1035 WP_015346890.1 biotin synthase BioB -
  MYSTI_RS06365 (MYSTI_01280) bioF 1590858..1592069 (+) 1212 WP_015346891.1 8-amino-7-oxononanoate synthase -
  MYSTI_RS06370 (MYSTI_01281) bioD 1592821..1593498 (+) 678 WP_015346892.1 dethiobiotin synthase -
  MYSTI_RS06375 (MYSTI_01282) - 1593631..1593909 (+) 279 WP_015346893.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 47998.33 Da        Isoelectric Point: 7.6639

>NTDB_id=55651 MYSTI_RS06355 WP_015346889.1 1588230..1589591(-) (radA) [Myxococcus stipitatus DSM 14675]
MAKAKTHYTCQACGYQTAKWLGKCPDCGAWSSLLEEAGAKDDEKRPAWGASGGAAKPMLLKEVSGESEVRRRTGIAEFDR
VLGGGVVSGSVVLLGGDPGIGKSTLLLAALDKLARHGAVLYVSGEESLRQTKMRAERLRVDGENIHLFAETDAERVLGAA
ESLKPQALVVDSIQTMYLPELGNAPGSITQVREVAGRLMAYAKRTGVPTFIVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRILRAHKNRFGSTNEIGVFEMKGAGLVEVADPSALFLSERPVGKSGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEEIPLVGCDLFVNVAGGMQLNEPACDLAVCAALVSSLQNRPLDPHTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRVVMPAGSARRMEATKLRVVGVETLGDALRAMFD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=55651 MYSTI_RS06355 WP_015346889.1 1588230..1589591(-) (radA) [Myxococcus stipitatus DSM 14675]
ATGGCGAAGGCGAAGACGCACTACACCTGCCAGGCGTGCGGGTATCAGACGGCGAAGTGGCTGGGGAAGTGCCCGGATTG
CGGCGCGTGGAGCTCGTTGCTGGAGGAGGCGGGGGCCAAGGACGACGAGAAGCGCCCCGCGTGGGGGGCGTCGGGTGGCG
CGGCGAAGCCCATGCTCCTCAAGGAGGTCAGCGGGGAGTCGGAGGTGCGCCGCCGCACGGGCATCGCCGAGTTCGACCGC
GTCCTGGGCGGAGGCGTGGTGAGCGGCTCCGTCGTCCTCCTGGGCGGCGACCCGGGCATCGGCAAGTCCACGCTGCTGCT
CGCCGCGCTCGACAAGCTCGCCCGTCACGGCGCGGTGCTCTACGTCTCCGGTGAAGAGAGCCTGCGCCAGACGAAGATGC
GCGCGGAGCGCCTTCGCGTGGACGGAGAGAACATCCACCTCTTCGCGGAGACGGACGCGGAGCGGGTGCTGGGCGCCGCC
GAGTCGCTCAAGCCGCAAGCGCTCGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAATTGGGCAACGCGCCGGGCAG
CATCACCCAGGTGCGCGAGGTCGCCGGCCGGCTCATGGCCTACGCCAAGCGCACGGGCGTCCCCACCTTCATCGTGGGCC
ACGTGACGAAGGAAGGCTCCATCGCCGGCCCGCGCGTGCTCGAGCACATGGTGGACACCGTCCTCTACTTCGAGGGCGAG
CGCGGCCACCCCTTCCGCATCCTGCGCGCGCACAAGAACCGCTTCGGCTCCACCAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGCCTGGTCGAAGTCGCGGACCCCTCCGCGCTCTTCCTGTCCGAGCGCCCCGTGGGCAAGTCCGGCAGCGTCG
TCACCAGCACGCTCAACGGCACGCGTCCGCTGCTCGTGGAGGTCCAGGCGCTGGTGGCCCCCACCGGCTACGGCACCGCG
CGGCGCACGGCCATCGGCGTGGACGGCAACCGCGTGGCGCTGCTCGCCGCGGTGCTGGAGAAGAAGGAGGAGATTCCGCT
CGTGGGCTGTGACTTGTTCGTCAACGTCGCGGGCGGCATGCAGCTCAACGAGCCCGCGTGTGACCTGGCCGTGTGCGCGG
CGCTGGTGAGCAGCCTCCAGAACCGTCCGCTGGACCCGCACACGCTGGTGCTCGGTGAAGTGGGCCTCGCGGGCGAGGTG
CGCGCCGTGGGCCAGGTGGAACCCCGCCTCGCCGAGGCCGCCAAGATGGGCTTCCAGCGCGTGGTGATGCCCGCGGGCAG
CGCCCGGCGCATGGAGGCGACGAAGCTGCGCGTGGTGGGCGTGGAGACGCTGGGCGACGCGCTGCGGGCGATGTTCGACT
GA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(351-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

AAA domain (AAA_25)

(81-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L7U1F6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.98

100

0.53
  radA Streptococcus pneumoniae Rx1

52.643

100

0.528
  radA Streptococcus pneumoniae D39

52.643

100

0.528
  radA Streptococcus pneumoniae R6

52.643

100

0.528
  radA Streptococcus pneumoniae TIGR4

52.643

100

0.528
  radA Streptococcus mitis NCTC 12261

52.643

100

0.528
  radA Streptococcus mitis SK321

52.423

100

0.525

Multiple sequence alignment