Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J8L76_RS12055 Genome accession   NZ_CP072875
Coordinates   2629659..2631038 (+) Length   459 a.a.
NCBI ID   WP_216128153.1    Uniprot ID   -
Organism   Azospira inquinata strain Azo-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2624659..2636038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8L76_RS12035 (J8L76_12035) - 2625340..2625837 (+) 498 WP_216128149.1 TPM domain-containing protein -
  J8L76_RS12040 (J8L76_12040) lplT 2626005..2627270 (-) 1266 WP_216128150.1 lysophospholipid transporter LplT -
  J8L76_RS12045 (J8L76_12045) - 2627468..2628370 (+) 903 WP_216128151.1 LysR family transcriptional regulator -
  J8L76_RS12050 (J8L76_12050) alr 2628370..2629467 (+) 1098 WP_216128152.1 alanine racemase -
  J8L76_RS12055 (J8L76_12055) radA 2629659..2631038 (+) 1380 WP_216128153.1 DNA repair protein RadA Machinery gene
  J8L76_RS12060 (J8L76_12060) - 2631398..2632231 (+) 834 WP_216128155.1 NADPH-dependent oxidoreductase -
  J8L76_RS12065 (J8L76_12065) - 2632698..2635208 (+) 2511 WP_216128156.1 ABC transporter permease -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48804.41 Da        Isoelectric Point: 7.0091

>NTDB_id=556497 J8L76_RS12055 WP_216128153.1 2629659..2631038(+) (radA) [Azospira inquinata strain Azo-2]
MVKKSEKSVYICTECGTQLPKWQGQCPGCNAWNTLVESVAEKPVANNRFQSLAPTTPKLQPLAEIEAREAVRLPTGIGEL
DRALGGGLVAGGVVLIGGDPGIGKSTLLLQALANLTRQSPALGALYVSGEESGEQVALRAKRLQLEVGDLPLLAEINLER
ILAVLQEARPQVAVIDSIQTLWSEQLTSAPGSVAQVRECSAQLTRLAKQSGITVILVGHVTKDGALAGPRVLEHIVDTVL
YFEGDTHSSFRLIRAFKNRFGAVNELGVFAMTDKGLKGVNNPSALFLSQHAQDVPGSCVMVTQEGTRPLLVEIQALVDGA
MGGNPRRLTVGLEQNRLAMLLAVLHRHAGIGCYDQDVFVNAVGGVKISEPAADLAVLLAVVSSLRNRPLAPKLVVFGEVG
LTGEIRPAPRGQERLREAAKLGFTRALVPAANLPRQPLEGMEVQGVARLEEALQLAFGD

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=556497 J8L76_RS12055 WP_216128153.1 2629659..2631038(+) (radA) [Azospira inquinata strain Azo-2]
ATGGTGAAAAAAAGCGAAAAAAGCGTCTATATCTGCACCGAGTGCGGCACCCAGCTGCCCAAGTGGCAGGGCCAGTGCCC
GGGCTGTAACGCCTGGAATACCCTGGTGGAAAGCGTGGCGGAAAAGCCCGTGGCCAACAACCGCTTCCAGTCCCTGGCCC
CCACCACCCCCAAGCTCCAGCCCCTGGCGGAAATTGAGGCCCGGGAGGCGGTGCGCCTGCCCACGGGCATCGGGGAGCTG
GACCGGGCCCTGGGGGGCGGGCTGGTGGCTGGCGGGGTGGTGCTTATCGGCGGGGACCCGGGCATCGGTAAAAGTACTCT
GCTGCTCCAGGCCCTGGCCAACCTTACCCGCCAGTCCCCGGCCCTGGGGGCCCTTTATGTGAGCGGGGAAGAATCGGGGG
AACAGGTGGCCCTGCGGGCCAAGCGCCTGCAACTGGAGGTGGGGGATCTGCCCCTGCTGGCGGAAATTAACCTGGAGCGC
ATTCTGGCGGTGTTGCAGGAGGCCCGGCCCCAGGTGGCGGTGATCGATTCCATCCAGACCCTGTGGTCCGAGCAGCTCAC
TTCCGCTCCCGGCTCCGTGGCCCAGGTGCGGGAATGCTCGGCCCAGCTCACCCGGCTGGCCAAGCAGAGCGGCATTACGG
TGATTCTGGTGGGCCATGTGACCAAGGACGGGGCCCTGGCCGGTCCCCGGGTGCTGGAGCACATTGTGGATACGGTGCTC
TATTTCGAGGGGGATACCCATTCCAGCTTCCGCCTTATCCGGGCCTTCAAGAACCGCTTTGGGGCGGTGAATGAGCTGGG
GGTGTTCGCCATGACCGACAAGGGGCTGAAGGGGGTGAATAACCCCTCCGCCCTGTTCCTCTCCCAGCATGCCCAGGATG
TGCCCGGCTCCTGTGTCATGGTGACCCAGGAGGGCACCCGGCCCCTGCTGGTAGAAATCCAGGCCCTGGTGGATGGGGCC
ATGGGGGGCAATCCCCGGCGCCTCACCGTGGGCCTGGAGCAGAACCGGCTGGCCATGCTCCTGGCCGTGCTGCACCGTCA
TGCGGGCATCGGCTGCTACGACCAGGATGTGTTCGTCAATGCGGTGGGGGGGGTGAAAATTTCCGAACCGGCGGCGGACC
TGGCGGTGCTGCTGGCCGTGGTGTCCTCCCTGCGCAACCGGCCCCTGGCGCCCAAGCTGGTGGTCTTTGGGGAAGTGGGC
CTCACCGGGGAAATCCGTCCCGCCCCCCGGGGCCAGGAACGGCTGCGGGAAGCGGCCAAACTGGGCTTCACCCGGGCTCT
GGTGCCCGCCGCCAATCTGCCCCGCCAGCCCCTGGAAGGCATGGAGGTCCAGGGCGTGGCCCGGCTGGAAGAGGCGTTAC
AACTGGCCTTTGGGGACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(79-224)

Subunit ChlI of Mg-chelatase (ChlI)

(354-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.877

99.346

0.505
  radA Streptococcus mitis SK321

47.495

100

0.475
  radA Streptococcus pneumoniae Rx1

47.38

99.782

0.473
  radA Streptococcus pneumoniae D39

47.38

99.782

0.473
  radA Streptococcus pneumoniae R6

47.38

99.782

0.473
  radA Streptococcus pneumoniae TIGR4

47.38

99.782

0.473
  radA Streptococcus mitis NCTC 12261

47.162

99.782

0.471