Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   J8L76_RS02840 Genome accession   NZ_CP072875
Coordinates   630162..631151 (+) Length   329 a.a.
NCBI ID   WP_216129838.1    Uniprot ID   A0A975XTR5
Organism   Azospira inquinata strain Azo-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 625162..636151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8L76_RS02815 (J8L76_02815) - 625921..626178 (-) 258 WP_216129830.1 YfhL family 4Fe-4S dicluster ferredoxin -
  J8L76_RS02820 (J8L76_02820) coaD 626210..626692 (-) 483 WP_408627063.1 pantetheine-phosphate adenylyltransferase -
  J8L76_RS02825 (J8L76_02825) rsmD 626682..627221 (-) 540 WP_408627115.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  J8L76_RS02830 (J8L76_02830) - 627293..628603 (-) 1311 WP_216129834.1 M16 family metallopeptidase -
  J8L76_RS02835 (J8L76_02835) - 628634..629995 (-) 1362 WP_232368609.1 M16 family metallopeptidase -
  J8L76_RS02840 (J8L76_02840) pilA 630162..631151 (+) 990 WP_216129838.1 signal recognition particle-docking protein FtsY Machinery gene
  J8L76_RS02845 (J8L76_02845) - 631242..631910 (+) 669 WP_216129840.1 cell division ATP-binding protein FtsE -
  J8L76_RS02850 (J8L76_02850) ftsX 631910..632815 (+) 906 WP_216129841.1 permease-like cell division protein FtsX -
  J8L76_RS02855 (J8L76_02855) - 632898..634940 (-) 2043 WP_216129843.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  J8L76_RS02860 (J8L76_02860) - 634969..635517 (-) 549 WP_216129845.1 chemotaxis protein CheW -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 34902.19 Da        Isoelectric Point: 6.5069

>NTDB_id=556481 J8L76_RS02840 WP_216129838.1 630162..631151(+) (pilA) [Azospira inquinata strain Azo-2]
MFGFLKKSATDTSTATPEAGADAAPAALSWRERLFKGLARTRAQLGGKLKAVFARGKVDEELLEELETLLLTSDVGMEAT
EHLLNALKARAKQDKLDTPEAIQQALGDCLAELLAPLEQPLDISGHRPFVIMIAGVNGAGKTTSIGKLAKYFQSQGKSVL
LAAGDTFRAAAREQLQTWGERNNVTVIAQESGDPAAVVFDAIAAAKARGIDVVLADTAGRLPTQLHLMEEIAKVRRVIQK
ADPTGPHEVILVLDANIGQNALAQVKAFDKSLNVTGLVLTKLDGTAKGGVIAAIARQCPKPIRFIGVGEGIDDLRPFAVR
DFVDALLGD

Nucleotide


Download         Length: 990 bp        

>NTDB_id=556481 J8L76_RS02840 WP_216129838.1 630162..631151(+) (pilA) [Azospira inquinata strain Azo-2]
ATGTTTGGTTTCCTGAAAAAATCTGCCACCGACACTTCCACCGCCACGCCGGAGGCCGGAGCGGACGCCGCCCCCGCCGC
CCTTTCCTGGCGGGAGCGCCTTTTCAAGGGGCTGGCCCGCACCCGGGCCCAGCTGGGGGGCAAGCTCAAAGCCGTCTTCG
CCCGGGGCAAGGTGGATGAGGAATTGTTGGAAGAACTGGAAACTCTCCTGCTCACCAGCGATGTGGGCATGGAAGCCACG
GAGCACCTGCTCAACGCTCTCAAAGCCCGGGCCAAGCAGGACAAGCTGGATACGCCGGAAGCCATCCAGCAGGCCCTGGG
GGACTGTCTGGCCGAACTGCTAGCGCCCCTGGAACAGCCCCTGGACATTTCCGGCCACCGCCCTTTCGTAATCATGATCG
CCGGGGTCAACGGGGCGGGCAAAACCACCTCCATCGGCAAGCTGGCCAAGTATTTCCAGAGCCAGGGCAAGAGCGTACTC
CTGGCCGCCGGGGACACCTTCCGGGCCGCCGCCCGGGAACAGCTCCAGACCTGGGGCGAACGGAACAATGTGACGGTGAT
CGCCCAGGAAAGCGGCGATCCGGCCGCCGTAGTATTCGACGCCATCGCCGCCGCCAAGGCCCGGGGCATCGACGTGGTGC
TGGCGGACACCGCCGGGCGCCTGCCCACCCAGCTGCACCTCATGGAAGAAATCGCCAAGGTGCGCCGGGTCATTCAGAAA
GCGGACCCCACCGGCCCCCACGAGGTGATCCTGGTGCTGGACGCCAATATCGGCCAGAACGCCCTGGCCCAGGTGAAAGC
CTTCGATAAGTCCCTCAACGTCACCGGCCTGGTGCTGACCAAGCTGGACGGCACCGCCAAGGGCGGGGTCATCGCCGCCA
TTGCCCGCCAGTGCCCCAAGCCCATCCGCTTTATCGGCGTGGGGGAAGGCATCGACGATCTGCGCCCCTTCGCGGTACGG
GACTTTGTGGATGCCCTGCTGGGCGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(128-328)

SRP54-type protein, helical bundle domain (SRP54_N)

(45-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

64.952

94.529

0.614