Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   J9319_RS10445 Genome accession   NZ_CP072851
Coordinates   2036482..2037117 (+) Length   211 a.a.
NCBI ID   WP_017359733.1    Uniprot ID   A0A653S7S4
Organism   Bacillus altitudinis strain 6ww6     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2031482..2042117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9319_RS10405 (J9319_10405) - 2031646..2032764 (+) 1119 WP_024718533.1 NADH-dependent flavin oxidoreductase -
  J9319_RS10410 (J9319_10410) - 2032813..2033319 (-) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  J9319_RS10415 (J9319_10415) - 2033488..2033907 (+) 420 WP_116307053.1 Hsp20/alpha crystallin family protein -
  J9319_RS10420 (J9319_10420) - 2033929..2034381 (-) 453 WP_017359729.1 YppG family protein -
  J9319_RS10425 (J9319_10425) - 2034490..2034861 (-) 372 WP_017359730.1 YppE family protein -
  J9319_RS10430 (J9319_10430) - 2034920..2035153 (-) 234 WP_223255637.1 DUF5446 family protein -
  J9319_RS10435 (J9319_10435) sspM 2035351..2035455 (+) 105 WP_012010346.1 acid-soluble spore protein SspM -
  J9319_RS10440 (J9319_10440) - 2035479..2036435 (-) 957 WP_210552089.1 DUF2515 domain-containing protein -
  J9319_RS10445 (J9319_10445) recU 2036482..2037117 (+) 636 WP_017359733.1 Holliday junction resolvase RecU Machinery gene
  J9319_RS10450 (J9319_10450) - 2037137..2039824 (+) 2688 WP_025207532.1 PBP1A family penicillin-binding protein -
  J9319_RS10455 (J9319_10455) - 2039860..2040369 (-) 510 WP_116307057.1 YpoC family protein -
  J9319_RS10460 (J9319_10460) nth 2040366..2041028 (-) 663 WP_008344602.1 endonuclease III -
  J9319_RS10465 (J9319_10465) - 2041046..2041750 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24314.60 Da        Isoelectric Point: 9.6582

>NTDB_id=556376 J9319_RS10445 WP_017359733.1 2036482..2037117(+) (recU) [Bacillus altitudinis strain 6ww6]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=556376 J9319_RS10445 WP_017359733.1 2036482..2037117(+) (recU) [Bacillus altitudinis strain 6ww6]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653S7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697