Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   J9319_RS09020 Genome accession   NZ_CP072851
Coordinates   1757390..1757770 (+) Length   126 a.a.
NCBI ID   WP_234932518.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 6ww6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1752390..1762770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9319_RS09010 (J9319_09010) - 1754114..1755022 (+) 909 WP_008343827.1 trypsin-like serine protease -
  J9319_RS09015 (J9319_09015) - 1755169..1757162 (+) 1994 Protein_1735 glycosyltransferase family 39 protein -
  J9319_RS09020 (J9319_09020) nucA/comI 1757390..1757770 (+) 381 WP_234932518.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  J9319_RS09025 (J9319_09025) - 1757914..1758762 (+) 849 WP_008343823.1 STAS domain-containing protein -
  J9319_RS09030 (J9319_09030) - 1758797..1759339 (-) 543 WP_008343822.1 IseA DL-endopeptidase inhibitor family protein -
  J9319_RS09035 (J9319_09035) - 1759636..1760079 (+) 444 WP_008343821.1 hypothetical protein -
  J9319_RS09040 (J9319_09040) lexA 1760127..1760747 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  J9319_RS09045 (J9319_09045) yneA 1760907..1761218 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  J9319_RS09050 (J9319_09050) - 1761236..1761883 (+) 648 WP_017359583.1 recombinase family protein -
  J9319_RS09055 (J9319_09055) - 1761953..1762183 (+) 231 WP_008343816.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13776.40 Da        Isoelectric Point: 7.9019

>NTDB_id=556375 J9319_RS09020 WP_234932518.1 1757390..1757770(+) (nucA/comI) [Bacillus altitudinis strain 6ww6]
MGALLGGFGEDRFAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWGGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=556375 J9319_RS09020 WP_234932518.1 1757390..1757770(+) (nucA/comI) [Bacillus altitudinis strain 6ww6]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTTCGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGACACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGGCGGGCATCAAATCAGTGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548