Detailed information NTG0556367

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: J9319_RS06930
• Genome accession: NZ_CP072851
• Coordinates: 1336979..1339084 (-)
• Length: 701 a.a.
• NCBI ID: WP_210552421.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain 6ww6
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1331979..1344084

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J9319_RS06900 (J9319_06900)	-	1332229..1332471 (+)	243	WP_008346101.1	aspartyl-phosphate phosphatase Spo0E family protein	-
J9319_RS06905 (J9319_06905)	-	1332523..1334022 (-)	1500	WP_060781009.1	ATP-binding protein	-
J9319_RS06910 (J9319_06910)	-	1334227..1334682 (+)	456	WP_003211701.1	MarR family transcriptional regulator	-
J9319_RS06915 (J9319_06915)	motB	1334869..1335630 (-)	762	WP_210552420.1	flagellar motor protein MotB	-
J9319_RS06920 (J9319_06920)	motA	1335623..1336417 (-)	795	WP_008346088.1	flagellar motor stator protein MotA	-
J9319_RS06930 (J9319_06930)	clpC	1336979..1339084 (-)	2106	WP_210552421.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
J9319_RS06935 (J9319_06935)	-	1339330..1340373 (+)	1044	WP_048003074.1	membrane protein	-
J9319_RS06940 (J9319_06940)	queC	1340648..1341304 (+)	657	WP_008348090.1	7-cyano-7-deazaguanine synthase QueC	-
J9319_RS06945 (J9319_06945)	queD	1341305..1341745 (+)	441	WP_046527711.1	6-carboxytetrahydropterin synthase QueD	-
J9319_RS06950 (J9319_06950)	queE	1341738..1342469 (+)	732	WP_024719652.1	7-carboxy-7-deazaguanine synthase QueE	-
J9319_RS06955 (J9319_06955)	queF	1342485..1342982 (+)	498	WP_003211403.1	preQ(1) synthase	-
J9319_RS06960 (J9319_06960)	-	1343241..1343459 (+)	219	WP_017367128.1	hypothetical protein	-
J9319_RS06965 (J9319_06965)	-	1343559..1344083 (-)	525	WP_210552422.1	GNAT family N-acetyltransferase	-

Sequence

Protein

• Length: 701 a.a.
• Molecular weight: 78194.80 Da
• Isoelectric Point: 5.1807

>NTDB_id=556367 J9319_RS06930 WP_210552421.1 1336979..1339084(-) (clpC) [Bacillus altitudinis strain 6ww6]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPNLFGGGSFFSEQAGHATSQERPKQKGLLDELGRN
LTDGAHAGLIDPVIGRDEEVTRVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIANGDVPNKLKNKQVYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAFEILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALNEERYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEDIQSIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSKEAIIRLDMSEYME
KHSVSKIIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKKAVKVGFQSEQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDKDDLVKIVDLLLKDLSEQLKEQNLTVHV
TNEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTDMLLEEEQLTGFTVDVEHDEIVVKKS

Nucleotide

• Length: 2106 bp

>NTDB_id=556367 J9319_RS06930 WP_210552421.1 1336979..1339084(-) (clpC) [Bacillus altitudinis strain 6ww6]
ATGCGTTGTCAACATTGTCAAGTGAATGAAGCAACGATTCGCCTGAATATGCAAGTAAATTCGTCCCGTAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAACAGTCAAAAATGAAAATGGGTCCTAACCTGTTCGGAGGCGGTTCAT
TCTTCTCTGAGCAAGCAGGACATGCGACGAGCCAAGAGCGGCCTAAACAAAAAGGCTTGCTAGACGAGCTTGGCCGGAAT
TTAACGGATGGCGCACATGCTGGTTTAATCGATCCTGTCATTGGCCGTGATGAAGAAGTCACAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAACAATCCTGTCCTCATTGGTGAACCTGGTGTTGGTAAAACGGCCATAGCCGAAGGACTAGCAC
TAAAAATTGCAAATGGAGATGTACCAAATAAATTAAAGAACAAACAAGTTTATTTATTAGATGTTTCTTCACTTGTGGCA
AACACAGGTGTACGTGGTCAATTTGAGGAACGGATGAAGCAATTAATCAAAGAATTGCAAAGCCGTAAAAATATCATCTT
ATTCGTTGATGAAATTCATCTTCTTGTAGGCGCAGGCTCTGCCGAAGGGTCAATGGATGCCGGAAACATTTTGAAACCAG
CTCTAGCTCGAGGGGAACTGCAGCTAGTAGGTGCGACAACATTAAAAGAGTATCGTCAAATTGAAAAAGATGCTGCCCTT
GAACGCAGGTTCCAGCCCGTCATCGTTGATGAGCCAACACAGGATGAAGCATTCGAGATCTTAAAAGGCATTCAGGATAA
GTATGAAGCCTATCATGGCGTCACCTATTCTGACGAAGCCATTAAAGCGTGTGTTCAATTATCTTCGCGGTATATTCAAG
ACCGCCACTTGCCAGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAATCTCTCCATTGATGCAGCAAGT
GAAGATGAATTAACAAACCGTCTTGCGCAAATTGCCGCTGAAAAACAAGCCGCTTTAAATGAAGAACGCTATGAAAAAGC
AGCGAAGCTTCGAGACGAAGAAGAAGCGATTGAAGCGAGATTGCAAAACAAAACAAATGACAAAGAACATGTCGTCACAG
CTGAGGACATTCAGTCGATTGTAGAACAAAAAACAGGTATCCCTGTCGGCAAACTACAAGCAGACGAACAAACAAAAATG
AAAGAAATTGATGTCCGCTTAAAAGCCCGCGTCATTGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCCGTAAAAAG
AAGCAGAGCCGGCTTAAAATCAAAACACAGACCAACTGGCTCCTTCCTTTTCGTTGGGCCAACAGGCGTCGGGAAAACCG
AATTGTCTAAAACATTAGCGGAAGAATTATTTGGCTCAAAAGAAGCGATCATTCGTTTAGATATGAGTGAATACATGGAG
AAACACTCCGTGTCCAAAATCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCCGGACAGCTCACGGAAAAGGT
TCGCAGAAAACCATACAGCATCATTTTGCTCGATGAAATCGAAAAAGCGCACCCTGATGTCCAGCATATGTTCCTTCAAA
TCATGGAAGATGGCCGGCTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGACACGGTCATCATTATGACAAGTAAC
GCTGGCAGCACAGATAAAAAAGCGGTCAAAGTCGGGTTCCAGTCTGAACAAGAAGAAGCCATCGAAGAACAATCATTGAT
TGATTCACTGAGCGCTTATTTCAAACCGGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGATTCATTAGATAAAG
ACGATTTAGTCAAAATTGTGGATCTTCTGCTCAAAGATTTGTCAGAGCAGTTAAAAGAACAAAATCTAACTGTTCACGTC
ACAAACGAAGCGAAAGAAAAAATCGCTGAACTTGGTTACCATCCAGCATTTGGGGCTCGTCCGTTACGAAGAACGATTCA
AGAGCATGTTGAGGATCAAATGACGGACATGTTGCTTGAAGAAGAACAACTTACTGGATTTACAGTCGATGTTGAACATG
ACGAAATTGTTGTGAAAAAGAGCTAA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (116-248)

• AAA lid domain (AAA_lid_9) (253-353)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (611-686)

• AAA domain (Cdc48 subfamily) (AAA_2) (437-605)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	56.969	100	0.601
clpE	Streptococcus mutans UA159	56.51	100	0.601
clpE	Streptococcus pneumoniae Rx1	55.846	100	0.579
clpE	Streptococcus pneumoniae D39	55.846	100	0.579
clpE	Streptococcus pneumoniae R6	55.846	100	0.579
clpE	Streptococcus pneumoniae TIGR4	55.846	100	0.579
clpC	Bacillus subtilis subsp. subtilis str. 168	53.651	95.72	0.514
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	46.855	90.728	0.425
clpC	Streptococcus thermophilus LMD-9	44.427	92.154	0.409
clpC	Streptococcus thermophilus LMG 18311	44.272	92.154	0.408
clpC	Streptococcus pneumoniae TIGR4	44.479	90.442	0.402
clpC	Streptococcus pneumoniae Rx1	44.674	89.729	0.401
clpC	Streptococcus pneumoniae D39	44.674	89.729	0.401
clpC	Streptococcus mutans UA159	44.127	89.872	0.397