Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   J9319_RS05665 Genome accession   NZ_CP072851
Coordinates   1126229..1128055 (+) Length   608 a.a.
NCBI ID   WP_282598426.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 6ww6     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1121229..1133055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9319_RS05645 (J9319_05645) - 1121491..1122156 (-) 666 WP_007499010.1 TerC family protein -
  J9319_RS05650 (J9319_05650) mecA 1122421..1123086 (+) 666 WP_008348474.1 adaptor protein MecA Regulator
  J9319_RS05655 (J9319_05655) cls 1123172..1124692 (+) 1521 WP_008348473.1 cardiolipin synthase -
  J9319_RS05660 (J9319_05660) - 1124752..1126014 (+) 1263 WP_172793361.1 competence protein CoiA family protein -
  J9319_RS05665 (J9319_05665) pepF 1126229..1128055 (+) 1827 WP_282598426.1 oligoendopeptidase F Regulator
  J9319_RS05670 (J9319_05670) - 1128287..1128460 (-) 174 WP_189337188.1 hypothetical protein -
  J9319_RS05675 (J9319_05675) - 1128757..1129668 (-) 912 WP_007499002.1 ClpXP adapter SpxH family protein -
  J9319_RS05680 (J9319_05680) - 1129665..1130063 (-) 399 WP_210552355.1 thiol management oxidoreductase -
  J9319_RS05685 (J9319_05685) - 1130341..1131105 (-) 765 WP_008348461.1 lytic transglycosylase domain-containing protein -
  J9319_RS05690 (J9319_05690) - 1131131..1131706 (-) 576 WP_007498999.1 CYTH domain-containing protein -
  J9319_RS05695 (J9319_05695) - 1131924..1132289 (+) 366 WP_008348459.1 hypothetical protein -
  J9319_RS05700 (J9319_05700) - 1132323..1132952 (+) 630 WP_008348457.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70303.93 Da        Isoelectric Point: 5.2858

>NTDB_id=556364 J9319_RS05665 WP_282598426.1 1126229..1128055(+) (pepF) [Bacillus altitudinis strain 6ww6]
MTSQNNNNHLPDRSEVKEENKWRLEDIFESVDSWNKEFEAVKKEISKLAQFKGKLAHSADVLYEALTFQDQLSEKLGKLY
TYAHMKYDEDTTNSSFQALNDKASNLFTQLSSTSAYIVPEILSIQEDKLQQFILEKEELKLYSHALEEINKERPHILSEE
QEALLAEASEPLSTSSTTFSMFNNADISFPSVKDENGEEKKITHGNFITFLNSDDREVRKNAFKAVYKTYDQYKNTLAST
LSGSIKKDNFYAKVRHYKSAREAALSRNSIPEEVYDNLIDTVHQYLPLLHRYIELRKKVLKLDEVHNYDLYTPLVKDAGM
KLTYDEAKDYMLKGLAPLGEEYVSVLKEGLENRWVDVYENKGKRSGAYSSGSYGTNPYILMNWQNNIDNLFTLAHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNHLEDKKQRLYVLNHLLEGFRGTVFRQTMFAEFEHLIHVKAQ
EGEALTPEFMTNLYYDLNKKYFGDGMVVDKEIGLEWTRIPHFYYNYYVYQYATGYSAAQALSKQILEEGKPAVERYTDFL
KAGSSDYPINVLKKAGVDMASKEPIEAACQLFEEKLKEMEELISKTSE

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=556364 J9319_RS05665 WP_282598426.1 1126229..1128055(+) (pepF) [Bacillus altitudinis strain 6ww6]
ATGACTTCACAAAATAACAACAATCATTTACCAGACAGAAGCGAAGTAAAAGAAGAAAACAAATGGCGCCTTGAAGATAT
TTTTGAAAGTGTCGATTCATGGAATAAGGAATTCGAAGCTGTAAAAAAAGAAATTTCGAAGCTCGCCCAATTTAAAGGCA
AGTTGGCCCATTCTGCTGATGTCTTGTATGAAGCCCTAACATTTCAGGATCAACTTTCTGAAAAGCTTGGCAAGCTTTAT
ACATATGCGCACATGAAATACGATGAAGATACAACAAATTCATCATTTCAGGCTTTAAATGATAAAGCATCCAATTTATT
TACACAGCTGTCTAGTACATCTGCCTATATTGTTCCGGAAATTTTATCTATTCAAGAAGATAAGCTGCAACAATTTATTT
TGGAAAAAGAAGAATTAAAACTTTATTCTCACGCTCTCGAAGAAATCAACAAAGAGCGTCCGCATATTTTAAGTGAGGAG
CAAGAAGCTTTATTAGCTGAAGCCTCTGAACCTTTATCAACATCATCCACTACGTTTAGTATGTTTAATAATGCAGATAT
TTCGTTCCCTTCTGTTAAGGATGAAAATGGAGAAGAAAAGAAAATTACTCATGGCAACTTCATTACCTTTTTAAACAGTG
ATGATCGTGAAGTGAGAAAGAATGCTTTTAAAGCCGTTTATAAAACGTATGATCAGTATAAGAATACTTTGGCGTCTACA
CTCAGCGGCTCGATTAAAAAGGATAATTTTTATGCGAAAGTACGTCATTACAAATCGGCAAGAGAAGCAGCGTTATCACG
AAATAGTATTCCTGAAGAAGTGTATGACAATCTAATTGATACAGTTCATCAATATTTACCGTTATTACATCGCTACATTG
AATTGCGTAAAAAGGTATTAAAGCTTGATGAAGTGCACAATTATGACTTGTATACACCATTAGTAAAAGATGCTGGCATG
AAGCTGACCTATGATGAAGCAAAGGATTATATGCTGAAAGGGTTAGCGCCATTAGGAGAAGAATATGTTTCGGTATTAAA
AGAGGGACTCGAAAATCGCTGGGTAGACGTTTATGAGAATAAAGGGAAACGAAGCGGCGCGTATTCTTCTGGAAGCTATG
GCACGAACCCTTATATCTTAATGAACTGGCAAAATAATATTGATAATTTATTTACGCTGGCTCATGAATTTGGTCACTCT
GTTCATAGCTACTATACAAGAAAGCATCAGCCATATCCGTACGGAAACTACAGCATTTTTGTAGCGGAAGTAGCTTCTAC
AACAAATGAAGCATTACTAGGCGAATACTTACTCAATCATTTAGAGGACAAAAAGCAGCGCTTGTATGTGCTCAATCACT
TGTTAGAAGGATTTAGAGGGACGGTATTCAGACAAACGATGTTTGCAGAGTTCGAGCACCTGATTCATGTGAAAGCGCAA
GAAGGGGAGGCATTAACGCCAGAGTTCATGACGAACCTGTATTACGACCTGAATAAGAAGTATTTTGGCGACGGTATGGT
TGTGGATAAGGAAATCGGATTAGAATGGACGCGAATTCCGCATTTCTATTACAACTATTATGTGTATCAATATGCGACAG
GCTATAGTGCGGCTCAGGCATTAAGTAAACAAATTTTAGAAGAAGGGAAACCTGCAGTGGAGCGCTATACAGACTTCCTT
AAAGCAGGAAGCTCTGACTATCCAATCAACGTGCTGAAAAAAGCTGGTGTAGATATGGCATCAAAAGAACCAATTGAGGC
AGCATGTCAATTGTTTGAAGAAAAATTAAAGGAAATGGAAGAGCTCATCTCAAAGACTAGTGAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.158

97.697

0.48