Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   J9319_RS01935 Genome accession   NZ_CP072851
Coordinates   360562..360990 (-) Length   142 a.a.
NCBI ID   WP_007498233.1    Uniprot ID   A0AAU7FLT6
Organism   Bacillus altitudinis strain 6ww6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 355562..365990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9319_RS01905 (J9319_01905) - 355705..356034 (+) 330 WP_007498247.1 YckD family protein -
  J9319_RS01910 (J9319_01910) - 356081..356845 (-) 765 WP_017366587.1 MBL fold metallo-hydrolase -
  J9319_RS01915 (J9319_01915) - 356962..357381 (+) 420 WP_210552297.1 Lrp/AsnC family transcriptional regulator -
  J9319_RS01920 (J9319_01920) - 357406..358212 (+) 807 WP_210552298.1 AAC(3) family N-acetyltransferase -
  J9319_RS01925 (J9319_01925) comJ 358214..358600 (-) 387 WP_017366590.1 competence protein ComJ -
  J9319_RS01930 (J9319_01930) - 358738..360435 (-) 1698 WP_210552299.1 methyl-accepting chemotaxis protein -
  J9319_RS01935 (J9319_01935) nucA/comI 360562..360990 (-) 429 WP_007498233.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  J9319_RS01940 (J9319_01940) - 361359..363428 (+) 2070 WP_206114180.1 hydantoinase/oxoprolinase family protein -
  J9319_RS01945 (J9319_01945) - 363418..365403 (+) 1986 WP_050826930.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15926.90 Da        Isoelectric Point: 6.4881

>NTDB_id=556349 J9319_RS01935 WP_007498233.1 360562..360990(-) (nucA/comI) [Bacillus altitudinis strain 6ww6]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=556349 J9319_RS01935 WP_007498233.1 360562..360990(-) (nucA/comI) [Bacillus altitudinis strain 6ww6]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCGAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514