Detailed information NTG0556328

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KAF59_RS11625
• Genome accession: NZ_CP072849
• Coordinates: 2575054..2576061 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae MO10
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2570054..2581061

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KAF59_RS11615 (KAF59_11615)	cysM	2571218..2572105 (+)	888	WP_001279365.1	cysteine synthase CysM	-
KAF59_RS11620 (KAF59_11620)	mutS	2572373..2574961 (+)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
KAF59_RS11625 (KAF59_11625)	rpoS	2575054..2576061 (-)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
KAF59_RS11630 (KAF59_11630)	nlpD	2576135..2577070 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
KAF59_RS11635 (KAF59_11635)	-	2577070..2577696 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
KAF59_RS11640 (KAF59_11640)	surE	2577689..2578441 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
KAF59_RS11645 (KAF59_11645)	truD	2578443..2579528 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
KAF59_RS11650 (KAF59_11650)	ispF	2579558..2580034 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KAF59_RS11655 (KAF59_11655)	ispD	2580031..2580729 (-)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KAF59_RS11660 (KAF59_11660)	ftsB	2580726..2581010 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=556328 KAF59_RS11625 WP_000116737.1 2575054..2576061(-) (rpoS) [Vibrio cholerae MO10]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=556328 KAF59_RS11625 WP_000116737.1 2575054..2576061(-) (rpoS) [Vibrio cholerae MO10]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1