Detailed information NTG0556283

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: J9265_RS11940
• Genome accession: NZ_CP072847
• Coordinates: 2621413..2622420 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain A1552
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2616413..2627420

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J9265_RS11915 (J9265_11915)	rraA	2616988..2617503 (-)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-
J9265_RS11920 (J9265_11920)	-	2617578..2618495 (-)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
J9265_RS11925 (J9265_11925)	hslU	2618599..2619930 (-)	1332	WP_001293370.1	HslU--HslV peptidase ATPase subunit	-
J9265_RS11930 (J9265_11930)	hslV	2619996..2620553 (-)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
J9265_RS11935 (J9265_11935)	-	2620690..2621241 (-)	552	WP_001884022.1	SPOR domain-containing protein	-
J9265_RS11940 (J9265_11940)	cytR	2621413..2622420 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
J9265_RS11945 (J9265_11945)	priA	2622726..2624930 (-)	2205	WP_001247858.1	primosomal protein N'	-
J9265_RS11950 (J9265_11950)	rpmE	2625185..2625403 (+)	219	WP_000643446.1	50S ribosomal protein L31	-
J9265_RS11955 (J9265_11955)	-	2625711..2626988 (+)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
J9265_RS11960 (J9265_11960)	metJ	2627099..2627416 (-)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=556283 J9265_RS11940 WP_000224452.1 2621413..2622420(-) (cytR) [Vibrio cholerae strain A1552]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=556283 J9265_RS11940 WP_000224452.1 2621413..2622420(-) (cytR) [Vibrio cholerae strain A1552]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904