Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   J9312_RS18570 Genome accession   NZ_CP072845
Coordinates   3460041..3460763 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain XP     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3455041..3465763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9312_RS18535 (J9312_18400) fliW 3455181..3455612 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  J9312_RS18540 (J9312_18405) yviE 3455633..3456208 (-) 576 WP_015384781.1 DUF6470 family protein -
  J9312_RS18545 (J9312_18410) flgL 3456255..3457151 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  J9312_RS18550 (J9312_18415) flgK 3457162..3458685 (-) 1524 WP_069964359.1 flagellar hook-associated protein FlgK -
  J9312_RS18555 (J9312_18420) flgN 3458704..3459186 (-) 483 WP_014481048.1 flagellar protein FlgN -
  J9312_RS18560 (J9312_18425) flgM 3459202..3459468 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  J9312_RS18565 (J9312_18430) yvyF 3459549..3459968 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  J9312_RS18570 (J9312_18435) comFC 3460041..3460763 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  J9312_RS18575 (J9312_18440) comFB 3460727..3461023 (-) 297 WP_003227989.1 late competence protein ComFB -
  J9312_RS18580 (J9312_18445) comFA 3461083..3462474 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  J9312_RS18585 (J9312_18450) fakBA 3462581..3463426 (-) 846 WP_014481053.1 DegV family protein -
  J9312_RS18590 (J9312_18455) degU 3463524..3464213 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  J9312_RS18595 (J9312_18460) degS 3464296..3465453 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=556229 J9312_RS18570 WP_014481051.1 3460041..3460763(-) (comFC) [Bacillus subtilis strain XP]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=556229 J9312_RS18570 WP_014481051.1 3460041..3460763(-) (comFC) [Bacillus subtilis strain XP]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992