Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   J9312_RS16035 Genome accession   NZ_CP072845
Coordinates   2984508..2985152 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain XP     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2979508..2990152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9312_RS16000 (J9312_15880) mrpB 2980700..2981131 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  J9312_RS16005 (J9312_15885) mrpC 2981131..2981472 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  J9312_RS16010 (J9312_15890) mrpD 2981465..2982946 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  J9312_RS16015 (J9312_15895) mrpE 2982952..2983428 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  J9312_RS16020 (J9312_15900) mrpF 2983428..2983712 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  J9312_RS16025 (J9312_15905) mnhG 2983696..2984070 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  J9312_RS16030 (J9312_15910) yuxO 2984109..2984489 (-) 381 WP_069837723.1 hotdog fold thioesterase -
  J9312_RS16035 (J9312_15915) comA 2984508..2985152 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  J9312_RS16040 (J9312_15920) - 2985233..2986855 (-) 1623 Protein_3087 sensor histidine kinase -
  J9312_RS16045 (J9312_15925) - 2986953..2988200 (+) 1248 WP_031600262.1 IS256-like element ISBsu2 family transposase -
  J9312_RS16050 (J9312_15930) - 2988158..2988922 (-) 765 WP_264379345.1 hypothetical protein -
  J9312_RS16055 (J9312_15935) comX 2988938..2989159 (-) 222 WP_014480704.1 competence pheromone ComX -
  J9312_RS16060 (J9312_15940) - 2989161..2990024 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=556224 J9312_RS16035 WP_003220716.1 2984508..2985152(-) (comA) [Bacillus subtilis strain XP]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=556224 J9312_RS16035 WP_003220716.1 2984508..2985152(-) (comA) [Bacillus subtilis strain XP]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGACTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1